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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Bostr.3148s0250.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
BBR-BPC |
| Protein Properties |
Length: 342aa MW: 38089.1 Da PI: 9.7545 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.3148s0250.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 410.4 | 2.2e-125 | 1 | 341 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83
mdd g+re r+k+ ++ +s+k q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+a
Bostr.3148s0250.1.p 1 MDDGGHREngRHKAAQGqwlmQHqPSMK-----QVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTA 85
9999998878888733323332234444.....********************************************************* PP
GAGA_bind 84 lllvensla.......salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
l+++ens++ s++p+g+q+++g+k++++ +++++ pql+++a+e+re+e ++ lp++ a +a e++k+k+++r k+pk+
Bostr.3148s0250.1.p 86 LQYRENSMVtaaaanmSSCPPGCQISRGVKHMHHPHMHHHhqhhiPQLTENAYETREMEPNDGLPTSPPAGSALESAKPKRGKRVKDPKA 175
*******9999***999********************7667999********************************************** PP
GAGA_bind 162 kkakkkkkksekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWG 226
+++++++k+++k+++kvkkes+d+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWG
Bostr.3148s0250.1.p 176 TTQTAANKRGPKNQRKVKKESEDDLskimfvktahdyteensskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWG 265
*********************984358********************************88***************************** PP
GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
nGGWqS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
Bostr.3148s0250.1.p 266 NGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 341
**************************************************88***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MDDGGHRENG RHKAAQGQWL MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAIAERDM 60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMVTAAAAN MSSCPPGCQI SRGVKHMHHP 120
HMHHHHQHHI PQLTENAYET REMEPNDGLP TSPPAGSALE SAKPKRGKRV KDPKATTQTA 180
ANKRGPKNQR KVKKESEDDL SKIMFVKTAH DYTEENSSKH ILIGSKSDWK SQEMVGLNQV 240
VYDETTMPPP VCSCTGVLRQ CYKWGNGGWQ SSCCTTTLSM YPLPALPNKR HARVGGRKMS 300
GSAFNKLLSR LAAEGHHDLS NPVDLKDHWA KHGTNRYITI K*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY088564 | 0.0 | AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence. |
| GenBank | AY380572 | 0.0 | AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds. |
