PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3148s0214.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ZF-HD | ||||||||
Protein Properties | Length: 244aa MW: 27942.7 Da PI: 8.8924 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 86.5 | 2.8e-27 | 62 | 115 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k +Y eC+kNhAa +G++a+DGCgEf+++ g++++l+CaACgCHRnFHR e + Bostr.3148s0214.1.p 62 KPHYGECRKNHAAGIGTNAYDGCGEFVTT---GGEKDSLNCAACGCHRNFHREELIT 115 678*************************8...5668****************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 1.0E-25 | 64 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.4E-22 | 64 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-19 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.621 | 65 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.41E-11 | 177 | 241 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 178 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.7E-30 | 183 | 239 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDEIKPKKED KSKRRRTATA ICRETGDHVH YLPPTRKTKS KPTRTHHAPS PILESIFQVT 60 TKPHYGECRK NHAAGIGTNA YDGCGEFVTT GGEKDSLNCA ACGCHRNFHR EELITENGVT 120 ETVLEVLKIS SYQFRQIFCS PYGGGKSKVK KEEEEKEISG GDRIVVVDRL KGEDFVEEAG 180 RVKRLKTKFT AEQTEKMRDY AEKLRWKVRP EMRNEVEEFC VEIGVNRKNF MIWINNHKDK 240 THE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3148s0214.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865484.1 | 1e-122 | zinc-finger homeodomain protein 13 | ||||
Swissprot | Q9FMY7 | 1e-121 | ZHD13_ARATH; Zinc-finger homeodomain protein 13 | ||||
TrEMBL | D7MRF4 | 1e-121 | D7MRF4_ARALL; ATHB27 | ||||
STRING | Bostr.3148s0214.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15888 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 1e-113 | homeobox protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3148s0214.1.p |