PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3148s0159.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 21495 Da PI: 8.6897 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.5e-05 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Bostr.3148s0159.1.p 75 YKCSVCDKTFPSYQALGGHKASH 97 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.09E-9 | 75 | 140 | No hit | No description |
Pfam | PF13912 | 2.8E-14 | 75 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 75 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0025 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-10 | 118 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.016 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MALEALNSPR LVEDSTRSFH GVEKWTKGKK RSKRSRSDHH DHCLTEEEYL AFCLVLLARD 60 GGDLDSVTAA ERPGYKCSVC DKTFPSYQAL GGHKASHRSL FGSGDNDKLT PSTAVKSHVC 120 SICFKSFATG QALGGHKRCH YEGNRNGGVS NSEGGGSTSH VSSNSHRGFD LNITPVREFP 180 PDDEVMSPMA TKKPRLK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3148s0159.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, salt, cold and heat. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442062.1 | 1e-115 | PREDICTED: zinc finger protein AZF3-like | ||||
Swissprot | Q9SSW0 | 1e-106 | AZF3_ARATH; Zinc finger protein AZF3 | ||||
TrEMBL | R0GT27 | 1e-112 | R0GT27_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.3148s0159.1.p | 1e-145 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43170.1 | 2e-88 | zinc-finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3148s0159.1.p |
Publications ? help Back to Top | |||
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