PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0115.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 138aa    MW: 15339.1 Da    PI: 8.6686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0115.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-053456123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H++ H
  Bostr.3148s0115.1.p 34 YECTFCKRGFTNAQALGGHMNIH 56
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.64E-73161No hitNo description
Gene3DG3DSA:3.30.160.605.7E-53159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1363461IPR007087Zinc finger, C2H2
SMARTSM003550.00973456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MECERSSSST SSETGAVRHR HTAASSSTVT RRMYECTFCK RGFTNAQALG GHMNIHRRDR  60
LNKAKVQNDA DVALSSQAHR CFHVASDRGG YEQVDSVVLR TTTSNYMQHL RIGSMATRRE  120
HVVVEGDEID LELRLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0115.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168751e-168AB016875.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9D7.
GenBankCP0026881e-168CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865417.19e-83uncharacterized protein LOC9301491
TrEMBLD7MP512e-81D7MP51_ARALL; Zinc finger family protein
STRINGBostr.3148s0115.1.p2e-96(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-72C2H2 family protein