PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0032.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 382aa    MW: 41788.5 Da    PI: 8.0182
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-09103126326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           e C+ f+r G C++Gd C FaHg
  Bostr.3148s0032.1.p 103 GEVCPEFSRHGSCSRGDECGFAHG 126
                          589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.54E-699129IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53101128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6103127IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-7104126IPR000571Zinc finger, CCCH-type
SMARTSM003562.5136159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDVEHHKSGH INRPTVDIPP RKLLSSAKSP SSVSSPLRDY KDQKDYSYDS DSDDPYAGDH  60
FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ANRRDPRRYH YTGEVCPEFS RHGSCSRGDE  120
CGFAHGVFEG WLHPSRYRTE ACKDGKHCKR KVCFFAHSPR QLRVLPPSAD NFISGGCGGS  180
ASLSPASVLS NKNNRCCLFC SHSPTSTLLG LSRSPSSSPP LSPADKAAAF SRLSRRRTAV  240
LNELISSLDS FSLTEALAAS SSSPVTMPVS TAAMIASSNL SNHHHHRLPP WLDVGDKDLQ  300
LQQSSPLQFA PSPSSIPSYL HGQLQPPPSS FFSDEFTPCG GQLSDFTAAA TAVAEAREKK  360
NSFEVGSSGD LDLGWVNDLL T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114750.0AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2.
GenBankAY0349160.0AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankAY1425420.0AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871649.10.0zinc finger CCCH domain-containing protein 61 isoform X1
SwissprotQ9FKW20.0C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLD7MMK20.0D7MMK2_ARALL; Zinc finger (CCCH-type) family protein
STRINGBostr.3148s0032.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-165C3H family protein