PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.30275s0471.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

FAR1

Protein Properties

Length: 771aa MW: 88969.6 Da PI: 7.3326

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.30275s0471.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.5	2e-27	34	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdg 74 +fY+eYAk+vGF++ +++s++s+++g++++++fvC+++g++++ k++ +++ r ++++++t+Cka+l+vk+++dg Bostr.30275s0471.1.p 34 EFYKEYAKSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKTAKEDidiglgtdgfsiphaRKRGRINHSSSKTDCKACLHVKRRQDG 122 6*****************************************999*********99999999***************** PP FAR1 75 kwevtkleleHnHela 90 +w++ +l +eHnHe++ Bostr.30275s0471.1.p 123 RWVIRSLIKEHNHEIF 138 ***********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-25	34	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.9E-22	227	318	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.841	510	546	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.0E-6	517	544	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-6	521	548	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MPSGECSNVQ LDDNRINLEI NEGREFESKE EAFEFYKEYA KSVGFTTIIK ASRRSRMTGK 60 FIDAKFVCTR YGSKKTAKED IDIGLGTDGF SIPHARKRGR INHSSSKTDC KACLHVKRRQ 120 DGRWVIRSLI KEHNHEIFIS QANSLRDLGG RKKLEKQNGA IVKEVKSRKL LALEDGDVER 180 LLNFFTDMQV ENPFFFYSID LGEEQSLRNI FWVDAKGRSD YTCFCDVVSI DTTFIKSAYK 240 LPLIAFTGVN HHGQFLLLGC GLLLTDESKS GFVWTFRAWL KGMHGCHPRV ILTKHDQTLK 300 EAVSEVFPSS RHCFYMWDTL GQMPEKLGHV MRREKKFMDE INDAIYGSCK NDEFEKNWWK 360 VVDRFHLRDN LWLQSLYEDR EYWVPVYMKA VSLAGMCTAQ RSDSVNSVFD KYVQRKTSLK 420 AFIGQYKKMM QERYEEEEKA EIETLYKQPG LKSPSPFGKQ MAEVYTREMF KKFQVEVLGG 480 VACHPKKESE EDGVNKRTFR VQDYEQNRAF VVVWNSVSSE VVCSCRLFEF KGFLCRHAMI 540 VLQMSGELSI PSQYVLKRWT KDAKSSEVME SHQIDVDSTK AQRYIDLCLC SLKLSEEASL 600 SEESYNAAIN VLNEAFRNCD NMSNFIPNVE ESDSVAAQDP SRHEEQNNTF NEIGADTGQG 660 HSLHEVWKVT ALQEQRNRFS ILDDYLSAHE MGQINSMVSN RNGYCTVHQN IHSLGQSITQ 720 QRLYGTDQLS FRPEAMYERL QDMGQSSLRH HSQQLCDSSK HQQSNRNFSH *

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MPSGECSNVQ LDDNRINLEI NEGREFESKE EAFEFYKEYA KSVGFTTIIK ASRRSRMTGK  60
FIDAKFVCTR YGSKKTAKED IDIGLGTDGF SIPHARKRGR INHSSSKTDC KACLHVKRRQ  120
DGRWVIRSLI KEHNHEIFIS QANSLRDLGG RKKLEKQNGA IVKEVKSRKL LALEDGDVER  180
LLNFFTDMQV ENPFFFYSID LGEEQSLRNI FWVDAKGRSD YTCFCDVVSI DTTFIKSAYK  240
LPLIAFTGVN HHGQFLLLGC GLLLTDESKS GFVWTFRAWL KGMHGCHPRV ILTKHDQTLK  300
EAVSEVFPSS RHCFYMWDTL GQMPEKLGHV MRREKKFMDE INDAIYGSCK NDEFEKNWWK  360
VVDRFHLRDN LWLQSLYEDR EYWVPVYMKA VSLAGMCTAQ RSDSVNSVFD KYVQRKTSLK  420
AFIGQYKKMM QERYEEEEKA EIETLYKQPG LKSPSPFGKQ MAEVYTREMF KKFQVEVLGG  480
VACHPKKESE EDGVNKRTFR VQDYEQNRAF VVVWNSVSSE VVCSCRLFEF KGFLCRHAMI  540
VLQMSGELSI PSQYVLKRWT KDAKSSEVME SHQIDVDSTK AQRYIDLCLC SLKLSEEASL  600
SEESYNAAIN VLNEAFRNCD NMSNFIPNVE ESDSVAAQDP SRHEEQNNTF NEIGADTGQG  660
HSLHEVWKVT ALQEQRNRFS ILDDYLSAHE MGQINSMVSN RNGYCTVHQN IHSLGQSITQ  720
QRLYGTDQLS FRPEAMYERL QDMGQSSLRH HSQQLCDSSK HQQSNRNFSH *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	156	GRKKLEKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.30275s0471.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL021637	0.0	AL021637.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project).
GenBank	AL161552	0.0	AL161552.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872706.1	0.0	protein FAR1-RELATED SEQUENCE 1 isoform X2
Swissprot	Q5UBY2	0.0	FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBL	R0GY70	0.0	R0GY70_9BRAS; Uncharacterized protein
STRING	Bostr.30275s0471.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.2	0.0	FAR1-related sequence 1

Link Out ? help Back to Top
Phytozome	Bostr.30275s0471.1.p