 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.30275s0366.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
BES1 |
| Protein Properties |
Length: 285aa MW: 30944.7 Da PI: 8.4064 |
| Description |
BES1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.30275s0366.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF822 | 210.5 | 4.4e-65 | 2 | 135 | 1 | 146 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasas 89
++++r+ptwkErEnnkrRERrRRaiaaki++GLR +Gn+klpk++DnneVlkALc+eAGw+vedDGttyrkg+kp++++e ++ s+sas
Bostr.30275s0366.1.p 2 TSGTRTPTWKERENNKRRERRRRAIAAKIFSGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVEDDGTTYRKGCKPMDRMELMNGSTSAS 90
5899************************************************************************************* PP
DUF822 90 pesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslv 146
p+ss+q +sp++sy++sp+sssfpsp++ + +a+sl+p+l++ls+
Bostr.30275s0366.1.p 91 PCSSYQ--------HSPRASYNPSPSSSSFPSPTN----PFGDANSLIPWLKNLSSN 135
******........*******************98....56677899****999763 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MTSGTRTPTW KERENNKRRE RRRRAIAAKI FSGLRIHGNF KLPKHCDNNE VLKALCNEAG 60
WTVEDDGTTY RKGCKPMDRM ELMNGSTSAS PCSSYQHSPR ASYNPSPSSS SFPSPTNPFG 120
DANSLIPWLK NLSSNSPSKL PFFHGNSISA PVTPPLARSP TRDQVTIPDS GWLSGMQTPQ 180
SGPSSPTFSL VSRNPFFDKE SFKMGDCNSP MWTPGQSGNC SPAIPAGVDQ TSDVPMADGM 240
AAEFAFGCNA IATIGMVKPW EGERIHGECV SDDLELTLGH SRTR*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5zd4_A | 3e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_B | 3e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_C | 3e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| 5zd4_D | 3e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK118850 | 0.0 | AK118850.1 Arabidopsis thaliana At4g18890 mRNA for unknown protein, complete cds, clone: RAFL21-18-A16. |
| GenBank | AY088379 | 0.0 | AY088379.1 Arabidopsis thaliana clone 6321 mRNA, complete sequence. |
| GenBank | BT024512 | 0.0 | BT024512.1 Arabidopsis thaliana At4g18890 mRNA, complete cds. |
