PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0283.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 317aa    MW: 35377.6 Da    PI: 7.0617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0283.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.51.6e-34171228259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  Bostr.30275s0283.1.p 171 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQRCNVKKRVERSFQDPTVVITTYEGQHNHP 228
                           8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.3E-1101316IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.808.3E-36155230IPR003657WRKY domain
SuperFamilySSF1182907.19E-30162230IPR003657WRKY domain
PROSITE profilePS5081132.627165230IPR003657WRKY domain
SMARTSM007744.2E-40170229IPR003657WRKY domain
PfamPF031068.9E-27171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNISSQN GFDPSTYSFT DCLQSSPGAY  60
ESLLQKTFGL SPSSSEVFNS SIDQESNRDV HNDVINGRAC TETATRVSAS SSSSEADHPG  120
EDSGKSSRKR ELVGEEDQSS KKVGKTKKNE AKKQREPRVS FMTRSEVDHL EDGYRWRKYG  180
QKAVKNSPFP RSYYRCTTQR CNVKKRVERS FQDPTVVITT YEGQHNHPIP TNLRGSSAAA  240
AMFSADLMTP RSFAHDMFRT AAYTSGGSAA AALDYGYGQI DYGNANPTSH QEYHHGGDQY  300
ELLREIFPSI FFKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-29161230877Probable WRKY transcription factor 4
2lex_A5e-29161230877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0283.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423930.0AF442393.1 Arabidopsis thaliana WRKY transcription factor 28 (WRKY28) mRNA, complete cds.
GenBankAY0707610.0AY070761.1 Arabidopsis thaliana AT4g18170/T9A21_10 mRNA, complete cds.
GenBankAY1169430.0AY116943.1 Arabidopsis thaliana AT4g18170/T9A21_10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439894.10.0PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ20.0WRK28_ARATH; WRKY transcription factor 28
TrEMBLD7MCV80.0D7MCV8_ARALL; WRKY transcription factor
STRINGBostr.30275s0283.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.10.0WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]