PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0239.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 462aa    MW: 51436.4 Da    PI: 4.7158
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0239.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.2e-36381292102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y+++ed++++ ++sws ++nsf+v+d+ ef++++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Bostr.30275s0239.1.p  38 FLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQ 117
                           9********************999*****************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i r+ks
  Bostr.30275s0239.1.p 118 KHLLKTISRRKS 129
                           **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3932122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-6334127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3535127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDGVTGGRTD TGESVTAPPP RNPHPATLLS ANALPPPFLS KTYDMVEDPA TDAIVSWSPT  60
NNSFIVWDPP EFSRDLLPKH FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LKTISRRKSV QGHGSNSQSQ QLSQGQGSMA ALSSCVEVGK FGLEEEVEQL KRDKNVLMQE  180
LVKLRQQQQT TDNKLQVMVK RLQAMEQRQQ QIMSFLAKAI RNPTFLSQFI QTDTNMHVTE  240
ANKKRRLTED TTDADAENLS HNHNSAASDG RIVKYQPLRS DSMMRNMMKT DDEYPFLDGF  300
SSSNRVSAVT LQEVLPTTSG QSQAYAPAAS GQHLSYLPST STPLPDTLMP AIPRMPQTTQ  360
DSINDFPTEN YMDTDKNVSE PFISPSPFLD GGSVPIQLDG IPEDPDIDEL MSTCEFFEEC  420
LAESPVLGDA TTLENSNNTN GRHMDKLVEE LGLLTSETEQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-283612718120Heat shock factor protein 1
5d5u_B1e-273612727129Heat shock factor protein 1
5d5v_B1e-273612727129Heat shock factor protein 1
5d5v_D1e-273612727129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0239.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293470.0AK229347.1 Arabidopsis thaliana mRNA for heat shock transcription factor HSF1, partial cds, clone: RAFL16-59-L13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873200.10.0heat stress transcription factor A-1a
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLD7M9G00.0D7M9G0_ARALL; Heat shock factor
STRINGBostr.30275s0239.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]