PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0206.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 294aa    MW: 33076.6 Da    PI: 5.7624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0206.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19147197255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr ++ +g+++AeIrdp   + + +r++lg+f ta eAa+a+++a+ +l+g
  Bostr.30275s0206.1.p 147 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFETAIEAARAYDKAAFRLRG 197
                           7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-32146206IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22147207IPR016177DNA-binding domain
CDDcd000186.99E-31147205No hitNo description
PROSITE profilePS5103224.105147205IPR001471AP2/ERF domain
PfamPF008471.9E-13147197IPR001471AP2/ERF domain
SMARTSM003804.6E-36147211IPR001471AP2/ERF domain
PRINTSPR003672.3E-10148159IPR001471AP2/ERF domain
PRINTSPR003672.3E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MATLSEASVL FLIKKYLLDE LSPLPNAATN RSMNEPDFSI LGSSVHDFTS FDQTSFEFSE  60
FETKPEIIDL VTPKPEICDF EVKSEVPLES NDSFTFQSNP PRVIAQSNRK PPLKIAPPNR  120
TKWIQFANRN PKPEIPVPVV VAEEKRHYRG VRMRPWGKFA AEIRDPNRRG TRVWLGTFET  180
AIEAARAYDK AAFRLRGSKA ILNFPLEVGQ WNPRAEDGHG LNNKRKREEE VTVVEKVPKT  240
EESHAVSGGE NVESATSCLM AIDDWDLTEF LSMPLLSPLS PHPPFGYPQL TIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-30146208466ATERF1
3gcc_A7e-30146208466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0206.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615460.0AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973430.0Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868059.11e-177ethylene-responsive transcription factor 6
SwissprotQ8VZ911e-164EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLD7MBY01e-176D7MBY0_ARALL; Uncharacterized protein
STRINGBostr.30275s0206.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-134ethylene responsive element binding factor 6