PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

ERF

Protein Properties

Length: 180aa MW: 19781 Da PI: 6.69

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.30275s0134.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.6	6.4e-18	39	88	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Bostr.30275s0134.1.p 39 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 88 69**998.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.29E-33	38	98	No hit	No description
Pfam	PF00847	5.0E-12	38	88	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.497	39	96	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.88E-21	39	97	IPR016177	DNA-binding domain
SMART	SM00380	1.3E-39	39	102	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.1E-32	39	97	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-10	40	51	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-10	62	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MQDSSSLGSQ RNLRSPAPEK TGKSSKTKNE EKGVSKHPSF RGVRMRQWGK WVSEIREPRK 60 KSRIWLGTFS TPEMAARAHD VAALAIKGGS AHLNFPELAY HLPRPASADP KDIQEAAAAA 120 AAVEWKAPES PSSTVTSSPV ADDAFSDLPD LLLDVNDHNK IDGFWDSFPY EDPFFLENY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	32	96	6	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00436	DAP	Transfer from AT4G16750	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.30275s0134.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161544	0.0	AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBank	AY560874	0.0	AY560874.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g16750) mRNA, complete cds.
GenBank	BT011576	0.0	BT011576.1 Arabidopsis thaliana At4g16750 mRNA, complete cds.
GenBank	BT020592	0.0	BT020592.1 Arabidopsis thaliana At4g16750 gene, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97341	0.0	Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010440105.1	1e-111	PREDICTED: ethylene-responsive transcription factor ERF039
Swissprot	Q9SUK8	1e-110	ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBL	D7MCB9	1e-106	D7MCB9_ARALL; Uncharacterized protein
STRING	Bostr.30275s0134.1.p	1e-129	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16750.1	1e-110	ERF family protein

Link Out ? help Back to Top
Phytozome	Bostr.30275s0134.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]