PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.30057s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35479.8 Da PI: 5.6711 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W++++ g+ R++k+c++rw +yl Bostr.30057s0004.1.p 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPILAGLERCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+ l+v++++ lG++ W+ Ia++++ gRt++++k+ w++ Bostr.30057s0004.1.p 67 RGAFSSEEQNLIVELHAVLGNR-WSQIAARLP-GRTDNEIKNLWNS 110 89********************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.761 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.66E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.809 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.6E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-8 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MKRHSCCDKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PILAGLERCG KSCRLRWINY 60 LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT DNEIKNLWNS CIKKKLRRKG 120 IDPITHKPLS EVDKYTNISD NNNSTSYSSE TNQDFFVKEP SDFSDYLAFQ NQEPNSVSIN 180 NSLSSVIPMQ FNIDGSVSNP GFETQICVKP SILLLPLPPD NNSSTESGEE PVKVVTEPTL 240 ESNCGITSHL DNPGLEEMKW SDEYLNESLF SSPVYVKSES DFNSNIAFPW SQSHACDVFP 300 KDLERMAVSF GQTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.30057s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY550304 | 0.0 | AY550304.1 Arabidopsis thaliana MYB transcription factor (At1g57557) mRNA, complete cds. | |||
GenBank | BT029225 | 0.0 | BT029225.1 Arabidopsis thaliana At1g57560 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176068.1 | 0.0 | myb domain protein 50 | ||||
Swissprot | Q8VZQ2 | 1e-122 | MYB61_ARATH; Transcription factor MYB61 | ||||
TrEMBL | Q9C695 | 0.0 | Q9C695_ARATH; At1g57560 | ||||
STRING | Bostr.30057s0004.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 1e-168 | myb domain protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.30057s0004.1.p |
Publications ? help Back to Top | |||
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