PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

ERF

Protein Properties

Length: 190aa MW: 21346.2 Da PI: 9.8543

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.29827s0278.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1e-18	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f+tae Aa+a+++a+ l+g Bostr.29827s0278.1.p 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFDTAEAAARAYDQAAVLLNG 55 59***999.******8.....334*******************977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.31E-22	5	64	No hit	No description
SuperFamily	SSF54171	3.6E-20	6	64	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.194	6	63	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-38	6	69	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-32	6	63	IPR001471	AP2/ERF domain
Pfam	PF00847	3.2E-11	6	50	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE AAARAYDQAA VLLNGQNAKT 60 NFPVIKSNGS DSPDVNSTLR SPKSLSELLN AKIRKNCKDQ TPYLTCLRLD NDSSHIGVWQ 120 KRAGSKTSPN WVKLVELDDR VNARTVGDIG INNIKKRDDN VEEEDQMAMQ MIEELLNWTC 180 PVSASIAQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	6	70	14	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00527	DAP	Transfer from AT5G25390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.29827s0278.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874256.2	1e-122	ethylene-responsive transcription factor SHINE 3 isoform X2
Refseq	XP_020876090.1	1e-122	ethylene-responsive transcription factor SHINE 3 isoform X1
Swissprot	Q3E958	1e-122	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	D7M3Y0	1e-122	D7M3Y0_ARALL; Uncharacterized protein
STRING	Bostr.29827s0278.1.p	1e-138	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM834	28	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	1e-114	ERF family protein

Link Out ? help Back to Top
Phytozome	Bostr.29827s0278.1.p

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]