PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

ERF

Protein Properties

Length: 183aa MW: 19445.8 Da PI: 10.2401

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.29827s0238.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.3	1.9e-18	34	83	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+++++g Bostr.29827s0238.1.p 34 VYRGVRKRN-WGKWVSEIREPKK---KSRIWLGTFPSPEMAARAHDVAALSIKG 83 59**887.******854...6*********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.3E-34	34	97	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-12	34	83	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.63	34	91	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.42E-21	34	92	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.7E-32	34	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-10	35	46	IPR001471	AP2/ERF domain
CDD	cd00018	2.72E-32	35	93	No hit	No description
PRINTS	PR00367	3.8E-10	57	73	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MIASKTTTPK TSSASQEVKE EKTKPVRDSG KHQVYRGVRK RNWGKWVSEI REPKKKSRIW 60 LGTFPSPEMA ARAHDVAALS IKGASAILNF PDLAGSFPRP SSLSPRDIQA AALKAAHMEI 120 MTTSQSSSSF AFSSSQSSSS LESLVSSSEP GSEELGEIVE LPSLGSSYDG STQLGLGSSR 180 TV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-19	31	91	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00529	DAP	Transfer from AT5G25810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.29827s0238.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by cold stress. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005405	1e-138	AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBank	AY560855	1e-138	AY560855.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g25810) mRNA, complete cds.
GenBank	BT024923	1e-138	BT024923.1 Arabidopsis thaliana At5g25810 mRNA, complete cds.
GenBank	CP002688	1e-138	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	X94698	1e-138	X94698.1 A.thaliana TINY mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010493837.1	2e-91	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q39127	2e-82	TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBL	A0A3P5YWJ7	7e-81	A0A3P5YWJ7_BRACM; Uncharacterized protein
STRING	Bostr.29827s0238.1.p	1e-127	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	1e-73	ERF family protein

Link Out ? help Back to Top
Phytozome	Bostr.29827s0238.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]