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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.29827s0238.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 19445.8 Da PI: 10.2401 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+++++g Bostr.29827s0238.1.p 34 VYRGVRKRN-WGKWVSEIREPKK---KSRIWLGTFPSPEMAARAHDVAALSIKG 83 59****887.**********854...6***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.3E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 34 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.63 | 34 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-21 | 34 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-32 | 34 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 35 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.72E-32 | 35 | 93 | No hit | No description |
PRINTS | PR00367 | 3.8E-10 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MIASKTTTPK TSSASQEVKE EKTKPVRDSG KHQVYRGVRK RNWGKWVSEI REPKKKSRIW 60 LGTFPSPEMA ARAHDVAALS IKGASAILNF PDLAGSFPRP SSLSPRDIQA AALKAAHMEI 120 MTTSQSSSSF AFSSSQSSSS LESLVSSSEP GSEELGEIVE LPSLGSSYDG STQLGLGSSR 180 TV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-19 | 31 | 91 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00529 | DAP | Transfer from AT5G25810 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.29827s0238.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005405 | 1e-138 | AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence. | |||
GenBank | AY560855 | 1e-138 | AY560855.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g25810) mRNA, complete cds. | |||
GenBank | BT024923 | 1e-138 | BT024923.1 Arabidopsis thaliana At5g25810 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-138 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | X94698 | 1e-138 | X94698.1 A.thaliana TINY mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010493837.1 | 2e-91 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q39127 | 2e-82 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A3P5YWJ7 | 7e-81 | A0A3P5YWJ7_BRACM; Uncharacterized protein | ||||
STRING | Bostr.29827s0238.1.p | 1e-127 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 1e-73 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.29827s0238.1.p |
Publications ? help Back to Top | |||
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