PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0107.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 278aa    MW: 30677.7 Da    PI: 9.5664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-057698123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C+k Fs++  L  H++ H
  Bostr.29827s0107.1.p 76 YTCHFCKKGFSTSQALGGHQNAH 98
                          9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-772103No hitNo description
Gene3DG3DSA:3.30.160.603.3E-574102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.82276103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSSSGSSTPK AEKLKGIIVA MEKSKEKATR NTNLKLGSPQ EVTSERRIEN PCFRSSVVRR  60
GREIMKFYPS RSNKIYTCHF CKKGFSTSQA LGGHQNAHKQ EREWDKKRKE MEADFPGLAF  120
LNPYLDKPHI LLGGYSQDAL SNENHLGITL DPFKRLIYPS FNSGVIGGNS DMKMTVVPHV  180
TPTRFFTGNT STNGPASRVT DPSPNNNCPL ISRNVLPFPP RTTKLSSDVV SQENVLSEEN  240
FISKIGTNNV VEIDDDDDIQ PEAKKSKSGG IDLSLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0107.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073990.0AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421563.11e-169PREDICTED: uncharacterized protein LOC104707012
TrEMBLD7M5G81e-156D7M5G8_ARALL; Zinc finger family protein
STRINGBostr.29827s0107.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-155C2H2 family protein