 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bostr.29827s0034.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
GeBP |
| Protein Properties |
Length: 429aa MW: 46633 Da PI: 4.5804 |
| Description |
GeBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.29827s0034.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF573 | 117.7 | 6.5e-37 | 126 | 224 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88
lfqrlw++eDei lL+G++d+ ++++g ++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +
Bostr.29827s0034.1.p 126 LFQRLWTDEDEIELLRGFLDYiTSHRGNGSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQAT 214
79*******************9999***88888******************************************************** PP
DUF573 89 felskkiWgs 98
f++s+kiW++
Bostr.29827s0034.1.p 215 FDISRKIWNQ 224
********85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 429 aa
Download sequence Send
to blast |
MASDQRDIVF SVESPDLEDG GGGGGGGGGG GGGGETESDE DVVIPEPNEG EEDDPEYEDL 60
NSPSMVSAIS TAPAAKSSSS TGTVTVALPA GSAVPVASIP SDSDQKWHRM TEIVHQRPPI 120
DDSRRLFQRL WTDEDEIELL RGFLDYITSH RGNGSHPPDT APFYEQIKSK LQLDFNKNQL 180
VEKLRRLKKK YRNVMSKISS GKEVFFKSPH DQATFDISRK IWNQTGKIIG FEDNNVMDFE 240
ETNNVNNTND SSSFNVSIGN ANVDVDLENG LEKKVTMSRK RSRSRSGKID EDKPIIAPCD 300
GPMPNAVNLN ENVAAVGDFS DGRNLGGLIE ETVRNCVSPM IKEMMNGTTG MMMAAMGGFP 360
GCGAHALGVL SPMLMPSMNL GFGGKGVGDE RWRTQQILEL EVYSRRLELV QEQIRDTVNE 420
LKKMPNGG*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC007627 | 0.0 | AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G28040.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator |
