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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Bostr.29044s0068.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
MYB |
| Protein Properties |
Length: 262aa MW: 29741.4 Da PI: 7.4688 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.29044s0068.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT +Ed++l d+++ +G g W+t ++ g++R++k+c++rw +yl
Bostr.29044s0068.1.p 16 RGAWTDQEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYL 63
89********************************************97 PP
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| 2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
Bostr.29044s0068.1.p 69 RGNITSDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNSN 113
7999******************.*********.***********976 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0006970 | Biological Process | response to osmotic stress |
| GO:0010023 | Biological Process | proanthocyanidin biosynthetic process |
| GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MGKRATTSVK REELNRGAWT DQEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK 60
NYLRPGIKRG NITSDEEELI IRLHNLLGNR WSLIAGRLPG RTDNEIKNHW NSNLRKRLPK 120
TQTNQPKRIK HSTNNENNVC VIRTKAIRCS KGLLLSDLSL QKQSSTSSIS PLPLKEQEMD 180
QGGSSLMGDL EFDFDRIQSE FLFPDLMDFD GLDCGNVTSL VSSNEILEDL VPAQGNLDLN 240
RPFTSYHHGD DDEDWLGDFN C*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF371981 | 0.0 | AF371981.2 Arabidopsis thaliana putative transcription factor MYB123 (MYB123) mRNA, complete cds. |
| GenBank | AY519630 | 0.0 | AY519630.1 Arabidopsis thaliana MYB transcription factor (At5g35550) mRNA, complete cds. |
| GenBank | DQ447000 | 0.0 | DQ447000.1 Arabidopsis thaliana clone pENTR221-At5g35550 myb family transcription factor (At5g35550) mRNA, complete cds. |
| Publications
? help Back to Top |
- Coego A, et al.
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Plant J., 2014. 77(6): p. 944-53
[PMID:24456507] - Liu C,Jun JH,Dixon RA
MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
Plant Physiol., 2014. 165(4): p. 1424-1439
[PMID:24948832] - Zhu Z, et al.
Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
J. Exp. Bot., 2015. 66(13): p. 3775-89
[PMID:25911741] - Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
BMC Plant Biol., 2015. 15: p. 160
[PMID:26109181] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Li Y, et al.
Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
Sci Rep, 2016. 6: p. 30514
[PMID:27465838] - Li C,Zhang B,Chen B,Ji L,Yu H
Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
Nat Commun, 2018. 9(1): p. 571
[PMID:29422671]
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