PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29044s0040.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SAP
Protein Properties Length: 449aa    MW: 49345.4 Da    PI: 6.6252
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29044s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP742.24.2e-22614471454
                   SAP   1 mssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsr 88 
                           ms+ssss++         ++g + s+g +e+ps sr+r  a +vwpePfle+la+qva+das+s+G laaa+alanvf+v++tw+avsr
  Bostr.29044s0040.1.p   1 MSTSSSSNNG--------NSGAGGSGGVFEAPSPSRPRrGASDVWPEPFLESLAVQVAVDASSSAGLLAAAPALANVFRVSTTWQAVSR 81 
                           5555553333........33444566899******9986899*********************************************** PP

                   SAP  89 sdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdl 177
                           sd+lwq l+r++W+ t+l++dtWr+e+iyrhrtarnfrtr+++y+tlqfdp+dvde   +d+lsCrcl+lsd ylaaGfadG+vrlf l
  Bostr.29044s0040.1.p  82 SDHLWQLLSRQVWASTHLMHDTWRDEFIYRHRTARNFRTRNHTYFTLQFDPSDVDE---PDSLSCRCLTLSDLYLAAGFADGTVRLFLL 167
                           ****************************************************9998...689*************************** PP

                   SAP 178 etrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpG 266
                           ++rlhv+t++p  rdr+GrfsravsGivisdsr++fat+dGdihva+idg  ++++r+a++Gd+vndGalvdf+G+grWwvGl+aGvpG
  Bostr.29044s0040.1.p 168 TNRLHVRTLRPPLRDRFGRFSRAVSGIVISDSRITFATMDGDIHVAEIDG--VGHTRTAYAGDIVNDGALVDFTGCGRWWVGLFAGVPG 254
                           **************************************************..66*********************************** PP

                   SAP 267 rafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasn 354
                           rafhiWd+++ee+ fvGGsltdPeavmGWh+ltelt+++Gr+r++++etavaCt+++++v+dlrnqgv+++e+ee+ rGl+v+++da++
  Bostr.29044s0040.1.p 255 RAFHIWDCNSEETAFVGGSLTDPEAVMGWHTLTELTTSLGRLRISGNETAVACTRWKIMVIDLRNQGVIIGEDEEQrRGLMVTGFDAND 343
                           **********************************************************************99888779*********** PP

                   SAP 355 eayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavss 442
                           eayv++dsrG+a+vrrv++ ++vc+frv+g aqr+v+gCvn+ +al++agg++rvWe+e+ e ylys+rervgev+a+vad+rhvav+s
  Bostr.29044s0040.1.p 344 EAYVRMDSRGNASVRRVNTQHTVCEFRVSGaAQRRVMGCVNRLHALMCAGGIMRVWEVERGE-YLYSIRERVGEVDAIVADERHVAVAS 431
                           ******************************9*****************************77.************************99 PP

                   SAP 443 s....dgtihlldfga 454
                           s    +++ihl+dfga
  Bostr.29044s0040.1.p 432 SsstaQSIIHLWDFGA 447
                           86777899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813835.23E-565116IPR001810F-box domain
Gene3DG3DSA:1.20.1280.504.2E-565131No hitNo description
SuperFamilySSF509786.87E-11139318IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.1E-8142228IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.101.1E-8351445IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509786.87E-11362444IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSTSSSSNNG NSGAGGSGGV FEAPSPSRPR RGASDVWPEP FLESLAVQVA VDASSSAGLL  60
AAAPALANVF RVSTTWQAVS RSDHLWQLLS RQVWASTHLM HDTWRDEFIY RHRTARNFRT  120
RNHTYFTLQF DPSDVDEPDS LSCRCLTLSD LYLAAGFADG TVRLFLLTNR LHVRTLRPPL  180
RDRFGRFSRA VSGIVISDSR ITFATMDGDI HVAEIDGVGH TRTAYAGDIV NDGALVDFTG  240
CGRWWVGLFA GVPGRAFHIW DCNSEETAFV GGSLTDPEAV MGWHTLTELT TSLGRLRISG  300
NETAVACTRW KIMVIDLRNQ GVIIGEDEEQ RRGLMVTGFD ANDEAYVRMD SRGNASVRRV  360
NTQHTVCEFR VSGAAQRRVM GCVNRLHALM CAGGIMRVWE VERGEYLYSI RERVGEVDAI  420
VADERHVAVA SSSSTAQSII HLWDFGAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29044s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2231250.0AJ223125.1 Arabidopsis thaliana mRNA for sterile apetala.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198426.10.0Transducin/WD40 repeat-like superfamily protein
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A178UR360.0A0A178UR36_ARATH; SAP
STRINGBostr.29044s0040.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]