PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NF-YA

Protein Properties

Length: 276aa MW: 30567.3 Da PI: 10.0862

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.28625s0302.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103	2.8e-32	137	193	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF Bostr.28625s0302.2.p 137 NEPIFVNAKQYQAILRRRQHRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGSGGRF 193 59**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-36	135	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.507	136	196	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-26	138	193	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-22	139	161	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	141	161	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-22	170	193	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEMMSTHIPG MKQTGFQLED HDSSSTQSTG GESYSEVASL SEPNNRYGHN IVTHLSGYKE 60 NPENPIGSHS KSILLKLSQD SVVLPIEAAS WPLHGTETPH FNGFLPFPYA SQRTVQHPQI 120 GGLVPSRMPL PHNIPENEPI FVNAKQYQAI LRRRQHRAKL EAQNKLIKVR KPYLHESRHL 180 HALKRARGSG GRFLNTKKLQ ESKSPQCPPF SGSPHVFKKS PGKFWQQDIS RGGVGSNGST 240 ASCSDITGNN NDMFQQNPQF GFSGYPSNHH VSVLM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-19	137	197	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.28625s0302.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493613	0.0	AB493613.1 Arabidopsis thaliana At3g14020 mRNA for hypothetical protein, partial cds, clone: RAAt3g14020.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010465281.1	1e-173	PREDICTED: nuclear transcription factor Y subunit A-6-like
Refseq	XP_010465282.1	1e-173	PREDICTED: nuclear transcription factor Y subunit A-6-like
Swissprot	Q9LVJ7	1e-157	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	D7L2B4	1e-166	D7L2B4_ARALL; Predicted protein
TrEMBL	R0HNB9	1e-166	R0HNB9_9BRAS; Uncharacterized protein
STRING	Bostr.28625s0302.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	1e-159	nuclear factor Y, subunit A6

Link Out ? help Back to Top
Phytozome	Bostr.28625s0302.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]