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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.27991s0069.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
AP2 |
Protein Properties |
Length: 455aa MW: 49939.9 Da PI: 7.0054 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.27991s0069.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.6 | 5.6e-17 | 154 | 203 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Bostr.27991s0069.1.p 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203
78*******************......55************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 455 aa
Download sequence Send
to blast |
MLDLNIDADS PESTQYGDSY LDRQTSDGSA GNRLEESGTS TSSVINADGD EDSCSTRAFT 60 LSFDILKVGS SSGGDESPAS ASVAGVTKEF FPVSGDCGHL RDFEGSSSRS WIDLSFDRIG 120 DGDTKLMAPA PVPAPAPVPA QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY 180 LGGFDTAHAA ARAYDRAAIK FRGVDADINF TLGDYEEDMK QVQNLSKEEF VHILRRQSTG 240 FSRGSSKYRG VTLHKCGRWE ARMGQLLGKK AYDKAAINTN GREAVTNFEL SSYQNEINSE 300 TNNEGGHEKL DLNLGMSLSS GNAPKQNGRL FHFPSNTYET QRGVSLRMDN EFMGKPVNTP 360 IPYGSSDHRV YWNGACPSYN NTVEGRATEK RSEAEVMMSN WGWQRPGQTS TVRQQPTGPP 420 PPLFSVAAAS SGFSHFRPQL PNDNATRGYF YPQP*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF325074 | 0.0 | AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
GenBank | AY050815 | 0.0 | AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
GenBank | AY091418 | 0.0 | AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |