PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.27991s0037.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | Dof | ||||||||
Protein Properties | Length: 321aa MW: 34320.8 Da PI: 9.9342 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.4 | 1.5e-38 | 76 | 133 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGg++r+nkk + Bostr.27991s0037.2.p 76 ALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGSCRRNKKGK 133 789***************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-36 | 58 | 128 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-32 | 76 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.413 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MSTNSNNHPH HFQLQENGSL VSGHHQVLSH HFPQNPNPNP HHVDTAAAAT VDLGSVNGQA 60 AERARLAKNS QPLEGALKCP RCDSANTKFC YFNNYNLTQP RHFCKACRRY WTRGGALRNV 120 PVGGSCRRNK KGKSGNSKSS SSSSQNKQST SMVNATSPTT NSNVQLQTNS QFPFLPTLQN 180 LTQLGGIGLN LAAINGNNGG NGNTSSSFLN DLGFFHGGNT SGPVMGNNNN ENNIMTSLGS 240 ASNFALFDRT MGDYNFPNEG NMGLSTARVS QTAPVKMEEP HMGNISRPVL GLTSLGNQSN 300 QYWTGTGLPG SSSNHHQHLM * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00281 | DAP | Transfer from AT2G28810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.27991s0037.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005727 | 0.0 | AC005727.3 Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence. | |||
GenBank | BT032877 | 0.0 | BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001189627.1 | 1e-180 | Dof-type zinc finger DNA-binding family protein | ||||
Swissprot | Q9ZV33 | 1e-180 | DOF22_ARATH; Dof zinc finger protein DOF2.2 | ||||
TrEMBL | F4IJM6 | 1e-179 | F4IJM6_ARATH; Dof-type zinc finger DNA-binding family protein | ||||
STRING | Bostr.27991s0037.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.2 | 1e-154 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.27991s0037.2.p |
Publications ? help Back to Top | |||
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