PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

TALE

Protein Properties

Length: 636aa MW: 70462.4 Da PI: 6.93

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27895s0119.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	453	490	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + Bostr.27895s0119.1.p 453 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 490 665569******************************88 PP
2	BELL	123.7	7.5e-40	311	382	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Bostr.27895s0119.1.p 311 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 382 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-84	239	380	IPR006563	POX domain
Pfam	PF07526	6.1E-52	245	379	IPR006563	POX domain
PROSITE profile	PS50071	12.86	431	494	IPR001356	Homeobox domain
SMART	SM00389	1.1E-9	434	498	IPR001356	Homeobox domain
CDD	cd00086	6.01E-13	434	495	No hit	No description
SuperFamily	SSF46689	1.13E-17	435	501	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	437	500	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	451	490	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MDLAATTLHH HHHHNSDSSM SQDYHHHQGI FSFSNGFHRS SATTHQEEVD ESAVSGAQIP 60 VYETAGMLSE MFAFPGGGGS GGEILDQSTK QLLEQQNRHN NNNNNNSTLH MLLPNHHQGF 120 AFTDENTMQQ QQQQHFTWPS SSDHHHNRDM IGTVHVEGGK GLSLSLSSSL AAAKAEEYRS 180 IYCAAVDGTS SSSNASAHHH QFNQFKNLLL DNNSSHHHHQ VVGHFGSSSS SPMAASSSIG 240 GFYTLRNSKY TKPAQELLEE FCSVGRGHFK KNKLSRNNSN PNTTGGGGGG GGGSSSSVGT 300 ANDNPPLSPA DRIEHQRRKV KLLSMLEEVD RRYNHYCEQM QMVVNSFDQV MGYGAAVPYT 360 TLAQKAMSRH FRCLKDAVAV QLKRSCELLG DKEAAGAASS GLTKGETPRL RLLEQSLRQQ 420 RAFHHLGIME QEAWRPQRGL PERSVNILRA WLFEHFLNPY PSDADKHLLA RQTGLSRNQV 480 SNWFINARVR LWKPMVEEMY QQEAKEREEE AEENEIQQQR RQQQTNNNDT KPNNNENNFT 540 VITAQTPKTM TSTHHDIDSS FLPSVAATSH GGSDAFTVTT CQQDVSDFHV DDGGVNVIRF 600 GTKQAGDVSL TLGLRHSGNI PDKNTSFSVR DFGDF*

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MDLAATTLHH HHHHNSDSSM SQDYHHHQGI FSFSNGFHRS SATTHQEEVD ESAVSGAQIP  60
VYETAGMLSE MFAFPGGGGS GGEILDQSTK QLLEQQNRHN NNNNNNSTLH MLLPNHHQGF  120
AFTDENTMQQ QQQQHFTWPS SSDHHHNRDM IGTVHVEGGK GLSLSLSSSL AAAKAEEYRS  180
IYCAAVDGTS SSSNASAHHH QFNQFKNLLL DNNSSHHHHQ VVGHFGSSSS SPMAASSSIG  240
GFYTLRNSKY TKPAQELLEE FCSVGRGHFK KNKLSRNNSN PNTTGGGGGG GGGSSSSVGT  300
ANDNPPLSPA DRIEHQRRKV KLLSMLEEVD RRYNHYCEQM QMVVNSFDQV MGYGAAVPYT  360
TLAQKAMSRH FRCLKDAVAV QLKRSCELLG DKEAAGAASS GLTKGETPRL RLLEQSLRQQ  420
RAFHHLGIME QEAWRPQRGL PERSVNILRA WLFEHFLNPY PSDADKHLLA RQTGLSRNQV  480
SNWFINARVR LWKPMVEEMY QQEAKEREEE AEENEIQQQR RQQQTNNNDT KPNNNENNFT  540
VITAQTPKTM TSTHHDIDSS FLPSVAATSH GGSDAFTVTT CQQDVSDFHV DDGGVNVIRF  600
GTKQAGDVSL TLGLRHSGNI PDKNTSFSVR DFGDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-15	440	498	5	63	Homeobox protein Meis2
4xrm_B	1e-15	440	498	5	63	Homeobox protein Meis2
4xrs_A	9e-16	440	497	1	58	Homeobox protein Meis1
4xrs_B	9e-16	440	497	1	58	Homeobox protein Meis1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	293	TGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27895s0119.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF353092	0.0	AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBank	AY058179	0.0	AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBank	AY142019	0.0	AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429329.1	0.0	PREDICTED: BEL1-like homeodomain protein 4 isoform X3
Refseq	XP_019085111.1	0.0	PREDICTED: BEL1-like homeodomain protein 4 isoform X1
Swissprot	Q94KL5	0.0	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	D7LG22	0.0	D7LG22_ARALL; Uncharacterized protein
STRING	Bostr.27895s0119.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	0.0	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	Bostr.27895s0119.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]