PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB

Protein Properties

Length: 289aa MW: 33167.4 Da PI: 4.7513

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26959s0295.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l + + G +W+++++ g+ R++k+c++rw +yl Bostr.26959s0295.1.p 14 KGPWTAEEDRKLMNFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.1	6.4e-16	73	111	7	47
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E++ +d++ qlG++ W++Ia++++ gRt++++k++w+++ Bostr.26959s0295.1.p 73 YEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 599***********.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-20	5	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.853	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-26	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.67E-7	16	61	No hit	No description
PROSITE profile	PS51294	25.041	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-24	63	116	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-13	73	111	IPR001005	SANT/Myb domain
CDD	cd00167	5.33E-10	74	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGRQPCCDKV GLKKGPWTAE EDRKLMNFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SDYEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG 120 IDPLTHKPLS IVEQEDEEPI KKLQKIQMPL QEPVEKNMEE PTSYCLTEDN NTKNMSRLEE 180 SLDDDQFMAI NHEYGIEDVP LIDPESLELI CSNSTMSTST STSSNSSNDS RFLKDLQFPD 240 FDWSDYGNSN NDNNDGVDNI IENNMMSLWD VDDFSTWDLL LSSTFGLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-27	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269\|PubMed:23660402}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26959s0295.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269\|PubMed:23660402}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519565	0.0	AY519565.1 Arabidopsis thaliana MYB transcription factor (At1g66230) mRNA, complete cds.
GenBank	BT028904	0.0	BT028904.1 Arabidopsis thaliana unknown protein (At1g66230) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511551.1	0.0	PREDICTED: protein ODORANT1-like
Swissprot	Q9C7U7	1e-152	MYB20_ARATH; Transcription factor MYB20
TrEMBL	D7KTM0	1e-175	D7KTM0_ARALL; Uncharacterized protein
STRING	Bostr.26959s0295.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	1e-142	myb domain protein 20

Link Out ? help Back to Top
Phytozome	Bostr.26959s0295.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]