 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.26959s0279.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
MYB |
| Protein Properties |
Length: 247aa MW: 27882.6 Da PI: 8.5866 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.26959s0279.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw++yl
Bostr.26959s0279.1.p 10 KGAWTAEEDSLLRQCIAKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 57
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 49.9 | 7.2e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgr + +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l
Bostr.26959s0279.1.p 63 RGRLSSDEVDLLIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108
8999******************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MEGSPKGLRK GAWTAEEDSL LRQCIAKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPN 60
IKRGRLSSDE VDLLIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLSK KKEPCCTTKM 120
KKKNIISPPT TTIQKINVYK PRPRSFTVNN GCSHLNGLPE VDVISSSIGL NNNNVSENSI 180
TFNKDDEKDD FLNNIINEDS MWLENLLDES QDADAIVPAA TTNEQGATLV FDVEQLWSLF 240
DEETGT*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF062915 | 0.0 | AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds. |
| GenBank | AF325124 | 0.0 | AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
New Phytol., 2015. 206(1): p. 422-35
[PMID:25425527] - Li T, et al.
Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
[PMID:25450360] - Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
Phytochemistry, 2015. 111: p. 21-6
[PMID:25659750] - Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
PLoS ONE, 2015. 10(11): p. e0143212
[PMID:26588092] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275] - Li N, et al.
The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
Funct. Integr. Genomics, 2018. 18(3): p. 341-353
[PMID:29372433]
|
