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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26959s0271.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 296aa MW: 31888.9 Da PI: 6.7466 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 5.9e-10 | 207 | 248 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Bostr.26959s0271.1.p 207 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 248 69******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.32 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-12 | 198 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-13 | 199 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.07E-12 | 200 | 252 | No hit | No description |
SMART | SM00353 | 5.0E-12 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-7 | 207 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MALVNDHPNE PNYMAKQNSS SSEDLSSPGL DQPETAYAGG GGGGSASSSS TMNSDHQQHQ 60 GFVFYASGED HHNSLMDFNG SSFLNFDHHE SFPPPAISCG GSSGSGFSFL ESNNMSYGFT 120 NWNQHHMDII SPRSTETPQG QKDWLYSDST VVTTGSRHES VSPKSAGNKR SHTGESTQPS 180 KKPSSGVNGK AKPKPTTSPK DPQSLAAKNR RERISERLKI LQELVPNGTK VDLVTMLEKA 240 ISYVKFLQVQ VKVLATDEFW PAQGGKAPDI SQVKDAIDAI LSSSQRDRNS NLITN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26959s0271.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY128310 | 0.0 | AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds. | |||
GenBank | BT006320 | 0.0 | BT006320.1 Arabidopsis thaliana At1g66470 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887043.1 | 0.0 | transcription factor bHLH83 | ||||
Swissprot | Q9C707 | 1e-178 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | D7KTQ8 | 0.0 | D7KTQ8_ARALL; Basic helix-loop-helix family protein | ||||
STRING | Bostr.26959s0271.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-179 | ROOT HAIR DEFECTIVE6 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26959s0271.1.p |