PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0075.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 751aa    MW: 85263.1 Da    PI: 5.5946
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.25.7e-16226278255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            r  Wt+e H +F+ a++ L G+++  Pk+il++m+ + Lt  +++SHLQkY+ 
  Bostr.26959s0075.1.p 226 HRSLWTNERHMKFLAAISIL-GEKEFRPKSILRIMNDPNLTHRQIASHLQKYKA 278
                           6889****************.9999***************************85 PP
2Response_reg29.63.5e-11151221109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           +l++d + +    l+++le+    +v ++d +++al ++++++  ++l++  iemp++d   +++ + +++  +p i++ ++ + +   
  Bostr.26959s0075.1.p  15 ILLIDHDTASVVSLTSMLEQFSK-RVMSVDVASKALSMIEKHKkdIGLVIANIEMPHIDSNSFVTALLQKN--IPLILINSETKTKKPS 100
                           79999999999999*****7666.777888888888888666666**********************8866..9*************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + l  Ga   l Kp+ ++++ +
  Bostr.26959s0075.1.p 101 DLLAKGACLSLDKPIYENDIKN 122
                           ***************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-1212143IPR011006CheY-like superfamily
PROSITE profilePS5011022.00414128IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23006.5E-1515145No hitNo description
PfamPF000722.9E-815123IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.17E-716128No hitNo description
SuperFamilySSF466894.03E-14224282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-18225282IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-15227277IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MAGSVAPQCV DDIFILLIDH DTASVVSLTS MLEQFSKRVM SVDVASKALS MIEKHKKDIG  60
LVIANIEMPH IDSNSFVTAL LQKNIPLILI NSETKTKKPS DLLAKGACLS LDKPIYENDI  120
KNMWQHVLSR KSQELKKINI TGNQENIMDR DIDQIKAFRA SLKRQRTSQA SLLGRRLFID  180
TFTTSEKYQK RKSIRNVEWK TKLGCLVEIE NKKQEWKKVD NNVGRHRSLW TNERHMKFLA  240
AISILGEKEF RPKSILRIMN DPNLTHRQIA SHLQKYKAQI ERIRDALPRN KWKSTDKTFE  300
YSSDYEYPFK ASNLTKNLIT SNSLWNSLRM KNSSSSSSIT QFLFKTPNAE RKKNMSKFHL  360
GRKLDLSNHS RFGNIFNKSS MNVDYVPSTI SSNPNNILST DHANHTGLVS IGLGSENLPI  420
LSDLPSNVGA SNTCAFQKES ARISIPQYDP NPLHPLRSVL ESDVNQIDLD FISIPDSFVP  480
LADLCTMEKN YNFLPNNTMN PFGTNIDQMD LVPSIEHHSH CGINMNHMDW ISSAENYVLP  540
KTDMNINFPE KNTNQMDSVS SGEGYVLSEN MIPSEVDINQ MDMGYSGGSI LPLEETNTNH  600
VGSVSCEIPY GISSNTNMTI LETNTEEMNY VSSDEGLDVP IEDLISFDID VDEKDMPFWL  660
EENGFSERND LLSPSYLDQD LAFRKPMDST PHITMEGHDH SISMNFGSTS QQHNTMESCE  720
YHNKEVVNER DDMEGGDNID DYRDCMDWIY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0075.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415439.10.0PREDICTED: putative two-component response regulator-like APRR6
SwissprotQ9C9F60.0APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLR0I9140.0R0I914_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.26959s0075.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.10.0pseudo-response regulator 6