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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.26959s0039.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
CO-like |
Protein Properties |
Length: 412aa MW: 46504.3 Da PI: 5.3039 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.26959s0039.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 24.8 | 4.5e-08 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + +++++C ++ +lC+ C + H+ H++v
Bostr.26959s0039.1.p 14 ARACDSCVKRRARWYCAADDAFLCHACDGSVHSAnplarrHERV 57
578*****************************657888888876 PP
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2 | CCT | 68.4 | 1.8e-23 | 362 | 405 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
Bostr.26959s0039.1.p 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 405
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK 60 SASTGKHRHA SSSSPPHQAT WHQGFTRKAR TPRGGKKSHT MGFHDLVPEI STEDQAESYE 120 VEGQLIFEVP VMNPMVEEQC FNESMETKME LPMMPICFKS SDDEDDDNAE SCLNGLFPTD 180 MELAQFTADV ETLLGGGIER DFHPTEELGL GEMLKIEKKE VEEEEGAAIK DVCDLDEVDE 240 ISPFEISFDY EYAHKMTYEE EEDEKEDVMK NVMDMGVNEM SGRIKEEKKE KALMLRLDYE 300 SVISTWGGQG IPWTAREPSE IDLDMVCCPT DSMGESGADQ AHHYNHFRGL GLHMGEAGDG 360 GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRSSIAAA H*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 372 | 388 | RRTRLFSKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY054625 | 0.0 | AY054625.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520; T26J14.9) mRNA, complete cds. |
GenBank | AY081541 | 0.0 | AY081541.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520) mRNA, complete cds. |