 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.26833s0643.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
C2H2 |
| Protein Properties |
Length: 465aa MW: 52128.9 Da PI: 4.7734 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.26833s0643.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.3 | 0.0011 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C Cgk+F++ L H r H
Bostr.26833s0643.1.p 86 HICCECGKRFKSGKALGGHKRIH 108
68*****************9998 PP
|
| 2 | zf-C2H2 | 10.9 | 0.0015 | 139 | 159 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C C k F++ L H+r H
Bostr.26833s0643.1.p 139 CCVCYKKFTSMKALYGHMRFH 159
*******************99 PP
|
| 3 | zf-C2H2 | 11.4 | 0.001 | 346 | 368 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C C+ksFs+ L H +H
Bostr.26833s0643.1.p 346 HVCVTCNKSFSSYQALGGHRASH 368
79***********9999998887 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 7.2E-5 | 80 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 1.87E-8 | 84 | 159 | No hit | No description |
| SMART | SM00355 | 0.19 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.157 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 2.2E-7 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 8.725 | 137 | 159 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 4.6 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 0.003 | 139 | 160 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.38 | 346 | 368 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 2.7E-10 | 346 | 370 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.577 | 346 | 373 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 348 | 368 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 2.0E-4 | 395 | 407 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MEHLRGYKTN CQFSLERPRF GSIKVKIPRI QPFIAEEGKE VEEDDEAKSI GLEEEEEEDD 60
HEAKSMDLEE GDLEEEEEEE EEEKKHICCE CGKRFKSGKA LGGHKRIHAL ETRKFSMVRP 120
KMVSGMVGRS ERGELEVACC VCYKKFTSMK ALYGHMRFHP DRGWKGVLPP PLPHPLGNSS 180
SSTLSIDDHD DERMSTDYDD DDFDDDDDDD ENSELWDNNN LELENVVDLK ESFKGWSIRG 240
KRGRRCVLKV DVSDLKEPPP EDMKDINDTN GLLFLATTAE AAANLNVAET TASHSVEEKY 300
LEIAKKRKKK KKRLSEMEKE SSSTHDHQLE VVVAAEEGGA GVREKHVCVT CNKSFSSYQA 360
LGGHRASHNK VKILENHQPR ANAEASLLGT EAIVTGQALG GHKRCHWTGP VSTEAATAAP 420
TAPAGASFSQ ATETMQEVKK LQRTFLEFDL NELPPNEDEE EERV*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 304 | 308 | KKRKK |
| 2 | 304 | 312 | KKRKKKKKR |
| 3 | 306 | 312 | RKKKKKR |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB023029 | 0.0 | AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1. |
| GenBank | AB493794 | 0.0 | AB493794.1 Arabidopsis thaliana At5g56200 gene for hypothetical protein, partial cds, clone: RAAt5g56200. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
