PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0442.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 607aa    MW: 67109.3 Da    PI: 5.267
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0442.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.71.5e-29201254155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
  Bostr.26833s0442.1.p 201 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDLMNIEGLTRENVASHLQKYRL 254
                           79*******************.********************************8 PP
2Response_reg66.51.2e-22201271109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl vdD+p+ ++ l+++l + +y +v+   ++++ale+l+e+   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + 
  Bostr.26833s0442.1.p  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKIMESKKALEMLRENSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVM 105
                           799********************.***************999999******************985344..57**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + +  Ga d+l+Kp+  +el +
  Bostr.26833s0442.1.p 106 KGIIHGACDYLVKPVGLKELQN 127
                           ****************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.7E-1691605IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23009.0E-3417139No hitNo description
SuperFamilySSF521722.99E-3017135IPR011006CheY-like superfamily
SMARTSM004483.4E-2618129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.7919133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2020127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.12E-1942132No hitNo description
PROSITE profilePS5129411.954198257IPR017930Myb domain
SuperFamilySSF466891.79E-20198258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-30199259IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-26201254IPR006447Myb domain, plants
PfamPF002493.1E-9203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MELKSTEDGR TEKFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKIMES KKALEMLREN  60
SNMFDLVISD VEMPDTDGFK LLEIGLEMDL PVIMLSAHSD YDSVMKGIIH GACDYLVKPV  120
GLKELQNIWH HVVKKNIKSY AKNIGPSRQP LPPSESDLVP SVSKKRKDKV NDSGDEDDSD  180
REEDDGEGSE QDGDESGTRK KPRVVWSQEL HQKFVNAVQQ LGLDKAVPKK ILDLMNIEGL  240
TRENVASHLQ KYRLYLKKID EGQQQNMTPD AFGTRDSSYF QMAQLDGLGD FTATRQLPSS  300
GLLSRSHLTK LQPHMYSSVN LLGLNSSSFI QQGHHQSSSN SANPFGTYHS TLSPRIQNVN  360
LCQRTSSPLE PLQFPRSKCS AYMGDFKSIG DQAIGGSFVD SGMSFGSSST SLPSASTNTL  420
MLQANYTQTL HTASSGNQPC IEGTMSNSAS PNISVQGFSR FPSQSWQGNL NTTRFLSNSL  480
PLNHAFLPNQ VTCAGNNLGD CTSLVSPENP GGEMQCEPQL LGGFMQNMNS LDGQKWDQQN  540
CTMLNNTFGN VEYTLPEMKS GKPENAIVDN QHDVFDDIMN EMMKQEENNG MVSVAARFGF  600
DSFPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-24199259363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0442.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483380.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLR0EV990.0R0EV99_9BRAS; Two-component response regulator
STRINGBostr.26833s0442.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18