PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0196.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARF
Protein Properties Length: 767aa    MW: 85639.4 Da    PI: 5.8617
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0196.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24147248199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F 
  Bostr.26833s0196.2.p 147 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL 234
                           99****************************963.3445679************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             +++++el+++++r+
  Bostr.26833s0196.2.p 235 --RDEDGELRLGIRRA 248
                           ..5699999****996 PP
2Auxin_resp121.27.5e-40272353182
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                           +a+a+stks+F+v+Y+Pra+++eFv+++ek+ +++++++++G+Rf+m+fe++ds+err++G+v+gv dldp+rWpnSkWr+ 
  Bostr.26833s0196.2.p 272 VANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRNPICIGTRFRMRFEMDDSPERRCTGVVAGVCDLDPYRWPNSKWRCF 353
                           689*****************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.07E-42141261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-40141261IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-21145247No hitNo description
SMARTSM010192.1E-23147249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38147249IPR003340B3 DNA binding domain
PfamPF023622.4E-22147248IPR003340B3 DNA binding domain
PfamPF065071.8E-33272353IPR010525Auxin response factor
SuperFamilySSF542772.26E-10640720No hitNo description
PROSITE profilePS5174523.609643725IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MEFDLNTEIA EVEEDENDDV GARIEKGSAS SIYSELWHAC AGPLTSLPKK GNVVVYFPQG  60
HLEQDVMVSY SSPLEIPKLD LNPQIFCRVV NVQLLANKET DEVYTQVTLL PLQEFSMLNA  120
EGKEVRELGG DEERNGSSCV KRTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFAPLDYKQ  180
QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRDEDGE  240
LRLGIRRAAR PRNGLPGSVI EKNSCSNILS LVANAVSTKS MFHVFYSPRA THAEFVIPYE  300
KYITSIRNPI CIGTRFRMRF EMDDSPERRC TGVVAGVCDL DPYRWPNSKW RCFLVRWDES  360
FVSDHQERVS PWEIDPSVSL PHLSIQSSPT PKRPWAGLLD TTPPGNPITE RGGFLDFEES  420
VRPSKVLQGQ ENIGSASPSQ GFDVMNCRIL DFAMQSHANP VLLSSRVKDR FGEFVDATAR  480
DPACSGVVDL DRFPRVLQGQ EICSLKSFPQ FAGFSPAATS GKTTLEYTDP FAYQANKSSF  540
YPLALHGVRS THVPYQNPYN AGNQSSGHPS RAINFGEETR KSDALNESGV PNNVTADLPF  600
KIDMMGKQKG RDFNMNASSG CKLFGFSLPV ETPASNPQGS SKRICTKVHK QGSQVGRAID  660
LSRLNGYDDL LTELERLFNM EGLLRDPEKG WRILYTDSEN DMMVVGDDPW HDFCNVVWKI  720
HLYTKEEVEN ANDDNKSCLE QAALMMEASK SSSVSQPDSS PTITRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1123537622354Auxin response factor 1
4ldw_A1e-1123537622354Auxin response factor 1
4ldw_B1e-1123537622354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0196.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0808320.0AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds.
GenBankAY1139770.0AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280031.10.0auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLR0G8Q00.0R0G8Q0_9BRAS; Auxin response factor
STRINGBostr.26833s0196.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]