PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0192.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 433aa    MW: 48512.5 Da    PI: 9.4205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0192.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-057395123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C++C+k F r  nL+ H r H
  Bostr.26833s0192.1.p 73 FFCEICSKGFQREQNLQLHKRGH 95
                          67******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.15E-77295No hitNo description
SMARTSM003550.0197395IPR015880Zinc finger, C2H2-like
PfamPF121711.8E-57395IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.7417395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM0035593115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.15E-7145170No hitNo description
SMARTSM00355190150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNQDMVIPHN HHRLSFSSFV HAQEHITPNP NPNSKPASIN TPKKKKRNLP GNPDPDAEVI  60
AHSPKSLMAT NRFFCEICSK GFQREQNLQL HKRGHNLPWK LKERTNKNQV KKKVYICPEK  120
SCVHHDPTRA LADLTGIKKH FSRKHGEKKW KCDKCSKKYA VVSDWKAHSK ICGSREFRCD  180
CGTLFSRKDS FISHRSFCDV LAEESAKFFS VPSSLAANST ISRVADPTRI NHSHDTNNPI  240
LIQSQLNQSL TGTADLNVNN NHTTFLEQNF TNSDPIPQQA NAFALSPPPT PRGTSDSVHN  300
LWKLQEEECS HQWLLNDNEY MNNKNIIHKG ISKNQEDEIK KGNIYSGSNS TDANIASLFS  360
YSQEAGNLAS LSATTLLQKV AQMGSSSSSD TSTMLGLMTS SIFNNRMPNS DCLKAKNKEE  420
EWTRDFLGVG KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-31146211368Zinc finger protein JACKDAW
5b3h_F1e-31146211368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0192.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264280.0BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBankDQ0567310.0DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280537.10.0protein indeterminate-domain 13
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLR0GM860.0R0GM86_9BRAS; Uncharacterized protein
STRINGBostr.26833s0192.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.10.0C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]