PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26833s0038.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ARF | ||||||||
Protein Properties | Length: 861aa MW: 95778 Da PI: 6.6659 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1.1e-22 | 164 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F Bostr.26833s0038.1.p 164 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 251 99*****************************7333.34459************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++el+v+v+r+ Bostr.26833s0038.1.p 252 --RGENGELRVGVRRA 265 ..449999*****996 PP | |||||||
2 | Auxin_resp | 122.4 | 3.2e-40 | 290 | 372 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rWp+SkWrsLk Bostr.26833s0038.1.p 290 AWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPTRWPKSKWRSLK 372 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 160 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-40 | 161 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-20 | 162 | 264 | No hit | No description |
PROSITE profile | PS50863 | 11.42 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-20 | 164 | 265 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-22 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-37 | 290 | 372 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.1E-5 | 712 | 770 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.174 | 734 | 818 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.08E-11 | 734 | 811 | No hit | No description |
Pfam | PF02309 | 7.1E-6 | 780 | 819 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MASSEVSMKG NRGGENFSSS GYSDPKETRN VSVAGEGQKS HSNRSVAAER AVDPEAALYR 60 ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE QQMPLYDLPS KLLCRVINVD 120 LKAEADTDEV YAQITLLPEA NQDENAIEKE APPPPPPRFQ VHSFCKTLTA SDTSTHGGFS 180 VLRRHADECL PPLDMSRQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK 240 RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF 300 TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEDSDP 360 TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KIEPALAPPA LSPVPMPRPK RPRSNIAPSS 420 PDSSMLTREA KANMDPLPAS GLSRVLQGQE YSTLRTKHTE SVECDAPENS VVWQSSADDD 480 KVDVVSASRR YGSENWMPSA RHQPTYTDLL SGFGTNIDPS HGQRIPFYDH SLTPSMPAKK 540 ILSDPEGKFD YLTNQWQMHS GLSLKLHESP TVAAASDASF QGRGNGKYSE YPVLNGLSTE 600 NAGGNWPIRP RVLNYFEEVV QAQAQAQAQA QAREQVTKQP VMIQEETAKS RDGNCRLFGI 660 PLINNMNGTD SSMSQRNNLN DAAGLTQIAS PKVQDLSDQS KGSKSTNNHR EQGSQFQTNN 720 PHPKDAHTKT NSSRSCTKVH KQGIALGRSV DLSKFQNYEE LIAELDRLFE FNGELMAPKK 780 DWLIVYTDDE NDMMLVGDDP WQEFCCMVRK IFIYTKEEVR KMNPGTLSCR SEEEAVVGEG 840 SDAKDAKSAS NPSLSSAGNS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldx_A | 0.0 | 57 | 394 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 0.0 | 57 | 394 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26833s0038.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221252 | 0.0 | AK221252.1 Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-07-O11. | |||
GenBank | AK221254 | 0.0 | AK221254.1 Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-09-L23. | |||
GenBank | AK221274 | 0.0 | AK221274.1 Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-16-M02. | |||
GenBank | AK221305 | 0.0 | AK221305.1 Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-31-F22. | |||
GenBank | BT000784 | 0.0 | BT000784.1 Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response factor (At5g62000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001330603.1 | 0.0 | auxin response factor 2 | ||||
Refseq | NP_201006.2 | 0.0 | auxin response factor 2 | ||||
Refseq | NP_851244.1 | 0.0 | auxin response factor 2 | ||||
Refseq | NP_974980.1 | 0.0 | auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A178UUC3 | 0.0 | A0A178UUC3_ARATH; Auxin response factor | ||||
STRING | Bostr.26833s0038.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26833s0038.1.p |