PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0177.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 306aa    MW: 34022.9 Da    PI: 6.0182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0177.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019198220123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ Cgk F++   L  H  +H
  Bostr.26675s0177.1.p 198 YKCSVCGKEFPSYQALGGHKASH 220
                           9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-8197267No hitNo description
PROSITE profilePS5015710.305198220IPR007087Zinc finger, C2H2
PfamPF139121.8E-13198221IPR007087Zinc finger, C2H2
SMARTSM003550.0038198220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
PfamPF139123.9E-11245269IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995245267IPR007087Zinc finger, C2H2
SMARTSM003550.31245267IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDLLTKLKHI LTKVNQFSPS MPVAVLMKQL ESAIQENQDG LPVDDNVFIE SFLETIKRNC  60
STISDEDPSS DHKILESIRR EEDDVVLIEP GFGDDEGSFS EHIFLEGSSS FLETNRREEE  120
KEGGFANDDV FIELFLESIE RSKRKRSSNH DDDPSSSSSS MSEDEIAAFS HKRHSQTQPQ  180
TQTQPQPKLQ MLLMSDSYKC SVCGKEFPSY QALGGHKASH RVKPLLENVG DKTRPKTLAP  240
SGKIHKCSIC HRLFPTGQSL GGHKRRHYEG HKRSLDEEAV SQGDKLSPSG NGGVVTNVSD  300
TKHSL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0177.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741104e-73AC074110.5 Arabidopsis thaliana chromosome 1 BAC T18C15 genomic sequence, complete sequence.
GenBankAC0796744e-73AC079674.4 Arabidopsis thaliana chromosome 1 BAC F10F5 genomic sequence, complete sequence.
GenBankCP0026844e-73CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463335.11e-116PREDICTED: uncharacterized protein LOC104744002
SwissprotQ9SSW21e-28AZF2_ARATH; Zinc finger protein AZF2
TrEMBLD7KFT32e-81D7KFT3_ARALL; Uncharacterized protein
STRINGBostr.26675s0177.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-28zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]