PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0176.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 412aa    MW: 46040.2 Da    PI: 6.4546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0176.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073192214123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC+ Cgk F++   L  H  +H
  Bostr.26675s0176.1.p 192 FKCSVCGKGFPSYQALGGHKASH 214
                           89**********99999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.56E-8191214No hitNo description
PROSITE profilePS5015711.468192219IPR007087Zinc finger, C2H2
PfamPF139129.5E-13192215IPR007087Zinc finger, C2H2
SMARTSM003550.011192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SuperFamilySSF576674.56E-8241268No hitNo description
PROSITE profilePS501578.808246268IPR007087Zinc finger, C2H2
PfamPF139128.9E-12246270IPR007087Zinc finger, C2H2
SMARTSM003550.23246268IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDLKTLDQCP PLTKLAALKH KFLQQLSQDD LRIYERPKRK FSPPPDDDED PSSKRRCLEF  60
RREKEDDEGA NDAVFVEPLS IRQRSTSDQD PSPSSDTVKH RIEEEDEFTS DIAVFYKPWL  120
DSLRLKRLRL GDDEDPSSSV SPSDDEIAAL TLIQFSRDKR QTQTQTLTQP QSQTQSQTHT  180
TQPQTPTKFD LFKCSVCGKG FPSYQALGGH KASHRVKPPQ PLVEYAGADA GEKTRPKMLS  240
PSGKIHKCSI CHRLFPTGQA LGGHKRRHYE GVLGGHKHGN DEVVLKLSPN SNGSVKTKVL  300
DPEQSLSDNI LSGHKRNQDE VVSSRDKWNL SNVSVVKNEL DLELNLRESE GVLGGHKRSQ  360
DEDVLDENKW SPSSNGSGVT NVSDPEQSLR RLIDLNNPPS PEFESAIILP N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0176.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463335.11e-169PREDICTED: uncharacterized protein LOC104744002
TrEMBLA0A178WE081e-162A0A178WE08_ARATH; Uncharacterized protein
STRINGBostr.26675s0176.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-29zinc-finger protein 2