PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0367.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 307aa    MW: 34039.6 Da    PI: 6.5163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0367.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183383256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                           ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a+kkl+g+
  Bostr.26527s0367.1.p 33 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
                          69****999.**********8...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.65E-273288No hitNo description
SMARTSM003808.3E-343396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-283389IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-203389IPR016177DNA-binding domain
PROSITE profilePS5103220.313390IPR001471AP2/ERF domain
PfamPF008478.5E-143483IPR001471AP2/ERF domain
PRINTSPR003672.5E-93445IPR001471AP2/ERF domain
PRINTSPR003672.5E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTFRGVRQR TWGKWVAEIR EPNRGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQEEEEV VVNRNLSFSG HGSDSWAYKL  120
DTVRGLDFGL GPASGSRGSW SGKSSFQQED DDHNYNRRLS SSGSNLCWLL PKQSDSQDQE  180
SVNSASGCGG GGGSTLTFST KLRTKNLMVN PNYGLSNGAW SRFLVGQEKK TERDVSSSCG  240
SSDNKESMSV LSGGGERMHR PEVEEGTGYL EMDDRLEIDD LGLLIGKNGD FKNWCCEEFQ  300
HPWNWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-143489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0367.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516260.0AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608530.0AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260740.0BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873895.20.0dehydration-responsive element-binding protein 2G
SwissprotP618271e-179DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLD7LXV30.0D7LXV3_ARALL; Uncharacterized protein
STRINGBostr.26527s0367.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-175ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]