PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26527s0356.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C3H | ||||||||
Protein Properties | Length: 477aa MW: 50475.3 Da PI: 7.7594 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.5e-12 | 53 | 78 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ Bostr.26527s0356.1.p 53 DEPDCIYYLRTGVCGYGSRCRFNHPR 78 6899********************96 PP | |||||||
2 | zf-CCCH | 36.6 | 7.4e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ Bostr.26527s0356.1.p 100 QPMCQHFMRTGTCKFGASCKYHHPR 124 689********************96 PP | |||||||
3 | zf-CCCH | 39.8 | 7.3e-13 | 153 | 177 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG+Ck+G++C+F+H+ Bostr.26527s0356.1.p 153 GEKECSYFMRTGQCKFGSTCRFHHP 177 7899********************9 PP | |||||||
4 | zf-CCCH | 41.2 | 2.7e-13 | 306 | 331 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C++f+rtG Ck+G++C+F+H++ Bostr.26527s0356.1.p 306 EQPECQYFMRTGDCKFGSSCRFHHPM 331 5799********************95 PP | |||||||
5 | zf-CCCH | 29.6 | 1.2e-09 | 353 | 376 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +f + G+Ck+G+ CkF H++ Bostr.26527s0356.1.p 353 AQCTHFEEHGICKFGPACKFDHSM 376 67********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.098 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 56 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 57 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.798 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 102 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 103 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.45 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-10 | 153 | 177 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 154 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 157 | 176 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.798 | 304 | 332 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-6 | 304 | 331 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 307 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 310 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.019 | 349 | 377 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-4 | 349 | 376 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 353 | 377 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 353 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-4 | 355 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MERYGGAGEE KSRSDPSLEW TATGNETGIE ASMWRLGLRG GGGGGGSFPE RPDEPDCIYY 60 LRTGVCGYGS RCRFNHPRNR APVLGGLRTE AGEFPERIGQ PMCQHFMRTG TCKFGASCKY 120 HHPRQGGGGG GGGGEDSVTP ISLNYMGFPL RPGEKECSYF MRTGQCKFGS TCRFHHPVPP 180 GVQAPSQQQQ LSAGPTMYPS LQSQSVPSSQ QYGVVLARPQ LLPGSYVQSP YGYSQMVLPP 240 GMVPYSGWNP YQASVSAIPS PGTQPSMRNS SVYGITPLSP SAPAYQSAPS STGVSNKEQT 300 FPQRPEQPEC QYFMRTGDCK FGSSCRFHHP MEAASPKEIT LSHIGLPLRP GAAQCTHFEE 360 HGICKFGPAC KFDHSMGSSS LSYSPSASSL TDMPVAPYPL GSSSLGTLAP SSSSSSDQRT 420 ELLSPSSIKP IITTVGSETV ASGVSSSSPT TSCVSHPEPA ETNKGDSASI EAKTSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26527s0356.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK230175 | 0.0 | AK230175.1 Arabidopsis thaliana mRNA for zinc finger like protein, complete cds, clone: RAFL22-89-O03. | |||
GenBank | BT010886 | 0.0 | BT010886.1 Arabidopsis thaliana At5g18550 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287665.1 | 0.0 | zinc finger CCCH domain-containing protein 58 isoform X1 | ||||
Refseq | XP_023636660.1 | 0.0 | zinc finger CCCH domain-containing protein 58 isoform X1 | ||||
Swissprot | Q6NPN3 | 0.0 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | R0HAE2 | 0.0 | R0HAE2_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.26527s0356.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26527s0356.1.p |
Publications ? help Back to Top | |||
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