PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26326s0088.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 319aa    MW: 35920.1 Da    PI: 5.1606
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26326s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.62.7e-3163154697
                DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                           +w+eeDe+++L+Gl+d++ak g + + ++dafy+f+ +si +k+s++q+++Kir+LK++f  +++k+ +g++p+f++++d+++f++s++
  Bostr.26326s0088.1.p  63 IWNEEDELAVLKGLVDYRAKSGFQTKINWDAFYRFLGGSIVAKFSNDQVLSKIRKLKRRFLVHWEKIIEGNDPKFTRSSDSEAFGFSMM 151
                           8**************************************************************************************** PP

                DUF573  95 iWg 97 
                           iWg
  Bostr.26326s0088.1.p 152 IWG 154
                           **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.1E-2363154IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVSPKQLDFS SSGGADDTFS RQRSPRNPSS KRAASDAAEE AEEETKKKKK KKTKLGSPLS  60
IPIWNEEDEL AVLKGLVDYR AKSGFQTKIN WDAFYRFLGG SIVAKFSNDQ VLSKIRKLKR  120
RFLVHWEKII EGNDPKFTRS SDSEAFGFSM MIWGHNEADF AHDDDGIYKE MLKEHEEPVN  180
ENGAAKITDN GTARIAQQSE SGEEMFKEHE EVAGAEPFNE NGAAKTVENG STAGKESHDD  240
DDELCAVRDA FETLMSQGLS DYQKKLQLEK LMNIETGKRR ELSDEWKALC VEERRLIIEK  300
LRFSAKLAEA LDETKKPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26326s0088.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429565.11e-152PREDICTED: GLABROUS1 enhancer-binding protein-like 1
SwissprotQ8VYD21e-135STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBLR0G0S31e-146R0G0S3_9BRAS; Uncharacterized protein
STRINGBostr.26326s0088.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.11e-135DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]