PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26326s0060.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 309aa    MW: 34901.2 Da    PI: 7.4268
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26326s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.9e-09128149426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             C+ f++ G C++Gd+C FaHg
  Bostr.26326s0060.1.p 128 TACPEFRK-GSCRRGDSCEFAHG 149
                           67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.87E-5123153IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6125151IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7127149IPR000571Zinc finger, CCCH-type
SMARTSM0035627159182IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.296159183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMIGENNNRP HPTIEIPQWD RINDPTVTIS SPFSSVNLNG VNDYPHSPSP YLDSFAPLFR  60
YLPSNELTND SDSSSGDESS LTDEFRMYEF KIRRCARGRS HDWTECPFAH PGEKARRRDP  120
RKFHYSSTAC PEFRKGSCRR GDSCEFAHGV FECWLHPSRY RTQPCKDGTS CRRRICFFAH  180
TTEQLRVLPC SLDPYLGFSG LATSPTSILV SPPSESPPLS PITGELIASM RKMQLNGGGS  240
WSSPMRSGVR LAFSSSLRPI QAPTWLGIRE FEMRENEREE APAMEFVESG KELRAEMYAR  300
LSRENSLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26326s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053950.0AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence.
GenBankAF3705900.0AF370590.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g25900; F17H15.7) mRNA, complete cds.
GenBankAF3754030.0AF375403.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankAK1172720.0AK117272.1 Arabidopsis thaliana At2g25900 mRNA for putative Cys3His zinc finger protein ATCTH (ATCTH), complete cds, clone: RAFL16-82-I02.
GenBankAK2288680.0AK228868.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-19-E22.
GenBankAY1294680.0AY129468.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417368.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotO823070.0C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A178VMZ50.0A0A178VMZ5_ARATH; ATTZF1
STRINGBostr.26326s0060.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-169C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]