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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bostr.2618s0061.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
NAC |
| Protein Properties |
Length: 467aa MW: 53783.2 Da PI: 5.3721 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.2618s0061.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177 | 5.2e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgk
Bostr.2618s0061.1.p 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSTRDRKYPNGSRTNRATKGGYWKATGK 94
79****************************.99***************6345667999******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d++v +++++g+kktLv+y+grap+g +t Wvmheyrl
Bostr.2618s0061.1.p 95 DRRVSW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
*****9.8899***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60
DQEWYFFSTR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120
GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTSS 180
NLSGNSSFDV CSDLEISSNT HQVLLPYSNA TDTQPRFGNA NSIGVNTDME CEMLQHQMSL 240
PPLRVEKSPV RASDSCKRLN QNSSQSGFDD FTFAPSNSNQ FYNSNVDDHL RHIGNLDEQL 300
LDAGNSTWMR MSNENLNQSF IEEEGILPSF ESNDQDLEYY GGSRTNTINN IEIDDFFSFE 360
NDVEDNDNSN ITLNSSGVEM IEEEIIVNHK MLICTRQTTE ILYYQVVPSQ ILKIHISQVQ 420
GTEERAMLME ESKDSWFQKA ENVAKMKLKQ ISLVAKRYYK CLTIVF*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-53 | 4 | 157 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-53 | 4 | 157 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-53 | 4 | 157 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-53 | 4 | 157 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-53 | 4 | 157 | 15 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 4e-53 | 4 | 157 | 15 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB005238 | 1e-124 | AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11. |
| GenBank | CP002688 | 1e-124 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
