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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bostr.25993s0559.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
SBP |
| Protein Properties |
Length: 367aa MW: 39736.8 Da PI: 7.9419 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.25993s0559.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 137.5 | 3.9e-43 | 72 | 149 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+CqvegC +dl++ak y++rh+vC +hsk+p+v+v+gleqrfCqqCsrfh+l efD ekrsCrrrLa+hnerrrk+q+
Bostr.25993s0559.1.p 72 RCQVEGCGMDLTNAKGYYSRHRVCGMHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQP 149
6**************************************************************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MEMGSNSGPG LGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGSNRRVR 60
GGGSGQSGQI PRCQVEGCGM DLTNAKGYYS RHRVCGMHSK TPKVIVAGLE QRFCQQCSRF 120
HQLPEFDLEK RSCRRRLAGH NERRRKPQPA SLSVLSSRYG RIAPSLYGNA DAGMNGSFLG 180
NQDMGWTSAR TLDTRVMRRP VSAPSWQINP MNVFSQGSVG GGGTSFSSPE IMDTKLESYK 240
GMGDSNCALS LLSNPHQPQD NNNNNNTWRA SSGFCPMTVT MAQPPPAPSQ HQYLNPPWVF 300
KDDDNDMSPV LNLGRFTEPD TCQISNGTTM GEFELSDHHH HSRRQYIEDE NTRAYDSSSH 360
HNNCSL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353538 | 0.0 | AK353538.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-J24. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Stief A, et al.
Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors.
Plant Cell, 2014. 26(4): p. 1792-1807
[PMID:24769482] - Yu ZX, et al.
Progressive Regulation of Sesquiterpene Biosynthesis in Arabidopsis and Patchouli (Pogostemon cablin) by the miR156-Targeted SPL Transcription Factors.
Mol Plant, 2015.
[PMID:25355059] - Yu N,Niu QW,Ng KH,Chua NH
The role of miR156/SPLs modules in Arabidopsis lateral root development.
Plant J., 2015. 83(4): p. 673-85
[PMID:26096676] - Morea EG, et al.
Functional and evolutionary analyses of the miR156 and miR529 families in land plants.
BMC Plant Biol., 2016. 16: p. 40
[PMID:26841873] - Hyun Y, et al.
Multi-layered Regulation of SPL15 and Cooperation with SOC1 Integrate Endogenous Flowering Pathways at the Arabidopsis Shoot Meristem.
Dev. Cell, 2016. 37(3): p. 254-66
[PMID:27134142] - Xu M, et al.
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
PLoS Genet., 2016. 12(8): p. e1006263
[PMID:27541584] - Mahmood K,Xu Z,El-Kereamy A,Casaretto JA,Rothstein SJ
The Arabidopsis Transcription Factor ANAC032 Represses Anthocyanin Biosynthesis in Response to High Sucrose and Oxidative and Abiotic Stresses.
Front Plant Sci, 2016. 7: p. 1548
[PMID:27790239] - Mao YB, et al.
Jasmonate response decay and defense metabolite accumulation contributes to age-regulated dynamics of plant insect resistance.
Nat Commun, 2017. 8: p. 13925
[PMID:28067238] - Nguyen ST,Greaves T,McCurdy DW
Heteroblastic Development of Transfer Cells Is Controlled by the microRNA miR156/SPL Module.
Plant Physiol., 2017. 173(3): p. 1676-1691
[PMID:28082719] - Duan HC, et al.
ALKBH10B Is an RNA N6-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition.
Plant Cell, 2017. 29(12): p. 2995-3011
[PMID:29180595] - Dotto M,Gómez MS,Soto MS,Casati P
UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
Plant Cell Environ., 2018. 41(6): p. 1394-1406
[PMID:29447428] - He J, et al.
Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana.
PLoS Genet., 2018. 14(4): p. e1007337
[PMID:29672610]
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