PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0539.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 213aa    MW: 24170.3 Da    PI: 9.6934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0539.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014870123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C + F++   L  H+++H
  Bostr.25993s0539.1.p 48 YTCSFCRREFRSAQALGGHMNVH 70
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-64575No hitNo description
Gene3DG3DSA:3.30.160.608.8E-44673IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-54871IPR007087Zinc finger, C2H2
SMARTSM003550.00614870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2194875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKRTHLASLS NRSTTQEDEE DTNGDNRVIM NHYKNYEAGL IPWPPKNYTC SFCRREFRSA  60
QALGGHMNVH RRDRAKLRQI PSWLFEHHHI PNANPNPKFS SSSSSSRTPA HLEPSLTNQR  120
SKTTPFPSAR FDLLDSTTSY GGLMVDREKN KSNVCSRELK KGAIDACHSV RCEISRGDLM  180
NKKDDQVMGL ELGMSLRNPK QVLDLELRLG YL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-134370229superman protein
2l1o_A6e-134370229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0539.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935860.0AB493586.1 Arabidopsis thaliana At2g42410 gene for hypothetical protein, partial cds, clone: RAAt2g42410.
GenBankAC0059560.0AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862495.11e-139zinc finger protein 11
RefseqXP_002879984.11e-139zinc finger protein 11
SwissprotQ9SLB81e-139ZFP11_ARATH; Zinc finger protein 11
TrEMBLD7LI581e-137D7LI58_ARALL; Predicted protein
STRINGBostr.25993s0539.1.p1e-159(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-140zinc finger protein 11