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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25993s0515.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 270aa MW: 30404.4 Da PI: 7.9709 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 53 | 106 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ Bostr.25993s0515.1.p 53 PRLRWTPDLHLSFVRAVQRLGGPQRATPKLVLQMMNLKGLSIAHVKSHLQMYRS 106 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-29 | 49 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.751 | 49 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.9E-22 | 53 | 108 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 6.63E-14 | 53 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-9 | 54 | 105 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MAGTSSPGIC STWLDLNREE TVEKNNEEES SVEDEDQVTS SNNVRQYVRS NMPRLRWTPD 60 LHLSFVRAVQ RLGGPQRATP KLVLQMMNLK GLSIAHVKSH LQMYRSKKLE PSARHEIGAF 120 TCGQRSYLMD MIDSGCIPYG GDLRHVYNSK TIPSRVLNQD AVITDLGDNF LMRPSSWLSE 180 LYRNERDSIE NKTLPLLEIR KTVNEKRVRD EEVSSVKRLK SISGGGIQLP EFGNCRQKPT 240 DDINTMLSLS LFSTSSGDRN IASSDIVER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-18 | 54 | 108 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-18 | 54 | 108 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-18 | 54 | 108 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-18 | 54 | 108 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25993s0515.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074640 | 0.0 | AY074640.1 Arabidopsis thaliana F14N22.7/F14N22.7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517802.1 | 1e-163 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
TrEMBL | D7LIV0 | 1e-160 | D7LIV0_ARALL; Myb family transcription factor | ||||
STRING | Bostr.25993s0515.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 1e-139 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25993s0515.1.p |