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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25993s0115.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 579aa MW: 64611.3 Da PI: 5.9352 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.1e-14 | 404 | 450 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L A+ YIk+Lq Bostr.25993s0115.1.p 404 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYIKELQ 450 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.2E-50 | 49 | 240 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.53E-19 | 399 | 463 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.936 | 400 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.23E-15 | 403 | 454 | No hit | No description |
Pfam | PF00010 | 1.9E-11 | 404 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-19 | 404 | 462 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-18 | 406 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MMNRSDLGWD DEEKSVVSAV LGHLASDFLR ANSNSNQNQF LVMGTDDSLN KKLSSLVDWP 60 NSENFSWNYA IFWQQTMSRS GQQVLGWGDG CCREPNEEEE SKVVRSYNFN NLGLEEESWQ 120 DMRKRVLQKL HRLFGGSDED NYALSLEKVT STEIFFLASM YFFFNHGEGG PGRCYASGKP 180 VWLSDVVNSE SDYCFRSFMA KSAGIRTIVM VPTDAGVLEL GSVWSLPENI GLVKSVQALF 240 MRRITPPLMV TSNTNTSGGI HKLFGQDLNN SEHGAHAYPK KLDVRRNLDE RRFTPQSWEG 300 YNNNKGPTFG GCTSQREDVK VQENVNVVLD DNNYKTQIEF AGSSVAASSN PSTNTRLEKS 360 DSCTAKRPAS LLAASREGTV SVVDEKRPKK RGRKPANGRE EPLNHVEAER QRREKLNQRF 420 YALRSVVPNI SKMDKASLLG DAISYIKELQ EKVKIMEAER VRTESSSLSE SNPMTTRTVE 480 SPEVDIQAVN EEVVVKVISP LDSHPASRII QAMRNTEVSL MESKLSLAED TMFHTFVIKS 540 NNGSDPLTKE KLIAAVYPET SSTQQPLPSS SSQVSGDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-28 | 398 | 480 | 2 | 77 | Transcription factor MYC2 |
5gnj_B | 1e-28 | 398 | 480 | 2 | 77 | Transcription factor MYC2 |
5gnj_E | 1e-28 | 398 | 480 | 2 | 77 | Transcription factor MYC2 |
5gnj_F | 1e-28 | 398 | 480 | 2 | 77 | Transcription factor MYC2 |
5gnj_G | 1e-28 | 398 | 480 | 2 | 77 | Transcription factor MYC2 |
5gnj_I | 1e-28 | 398 | 480 | 2 | 77 | Transcription factor MYC2 |
5gnj_M | 1e-28 | 398 | 480 | 2 | 77 | Transcription factor MYC2 |
5gnj_N | 1e-28 | 398 | 480 | 2 | 77 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 385 | 393 | KRPKKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00101 | PBM | Transfer from AT2G46510 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25993s0115.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006418 | 0.0 | AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence. | |||
GenBank | AC006526 | 0.0 | AC006526.8 Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884075.1 | 0.0 | transcription factor ABA-INDUCIBLE bHLH-TYPE | ||||
Swissprot | Q9ZPY8 | 0.0 | AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE | ||||
TrEMBL | D7LEK3 | 0.0 | D7LEK3_ARALL; Basic helix-loop-helix family protein | ||||
STRING | Bostr.25993s0115.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46510.1 | 0.0 | ABA-inducible BHLH-type transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25993s0115.1.p |
Publications ? help Back to Top | |||
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