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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Bostr.25993s0113.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
ARF |
| Protein Properties |
Length: 599aa MW: 66976.1 Da PI: 7.2782 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.25993s0113.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 73.4 | 2.8e-23 | 125 | 225 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+lt sd++++g +++ +k+a+e+ + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF
Bostr.25993s0113.1.p 125 FVKILTASDTSTHGGFSVLRKHATEClpsldMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL- 212
89****************************9666677789************************************************. PP
-SSSEE..EEEEE- CS
B3 85 dgrsefelvvkvfr 98
+ +++ l+v+v+r
Bostr.25993s0113.1.p 213 -RGETGDLRVGVRR 225
.3489999***998 PP
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| 2 | Auxin_resp | 97.1 | 2.7e-32 | 251 | 330 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++tks+F v+Y+Pr s+F+++v+k++ a+k+ +s+GmRf+m+fe+e+s+er ++Gt++g dl++ +Wp SkWrsL+
Bostr.25993s0113.1.p 251 ASHAVNTKSIFIVLYKPRI--SQFIISVNKYMVAIKHGFSLGMRFRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQ 330
789***************8..9**********************************************777.*********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 599 aa
Download sequence Send
to blast |
MANVVDADFR RSGSNDDQLY TELWKACAGP LVEVPRYNER VFYFPQGHME QLVASTNQGV 60
VDQEIPVFNL PPKILCRVLS VLLKAEHETD EVYAQITLQP EEDQSEPTIL DPPLVEPAKP 120
TVDSFVKILT ASDTSTHGGF SVLRKHATEC LPSLDMTQPT PTQELVARDL HGYEWRFKHI 180
FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGETGDLR VGVRRLARQQ STMPASVISS 240
QSMRLGVLAT ASHAVNTKSI FIVLYKPRIS QFIISVNKYM VAIKHGFSLG MRFRMRFEGE 300
ESPERIFTGT IIGSGDLSSQ WPASKWRSLQ IQWDEPSSIK RPNKVSPWEI EPFSPSALTP 360
TLTQPQSKSK RSRPIDSSIS EITGSPVASN FLSSFSQSHE SNPLVKLLFN DPATERNLNK 420
SVFSSGLQGK KTEAPVTSCC RLFGFDLTSK PASAPIPPDK QLISLYSNNS DSTTKCQDPK 480
SSNSTKEQKQ QTSTRSRTKV QMRGTAVGRA VDLTLLRSYD ELIKELEKMF EIEGELSPKD 540
KWAIVFTDDE GDMMLVGDDP WDEFCKMAKK LFIYSSEEVK KMSSKSLLDD DGTIVNLE*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ldv_A | 1e-164 | 1 | 354 | 1 | 356 | Auxin response factor 1 |
| 4ldw_A | 1e-164 | 1 | 354 | 1 | 356 | Auxin response factor 1 |
| 4ldw_B | 1e-164 | 1 | 354 | 1 | 356 | Auxin response factor 1 |
| 4ldx_A | 1e-164 | 1 | 354 | 1 | 356 | Auxin response factor 1 |
| 4ldx_B | 1e-164 | 1 | 354 | 1 | 356 | Auxin response factor 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229924 | 0.0 | AK229924.1 Arabidopsis thaliana mRNA for ARF1 family auxin responsive transcription factor like protein, complete cds, clone: RAFL22-28-H22. |
