PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0059.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SBP
Protein Properties Length: 937aa    MW: 104485 Da    PI: 5.432
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.12.2e-42144221178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Bostr.25993s0059.1.p 144 VCQVENCEADLSKVKDYHRRHKVCEMHSKATSAMVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 221
                           6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-34138206IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.633142219IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-39143223IPR004333Transcription factor, SBP-box
PfamPF031105.8E-31145218IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.82E-7727828IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-7729826IPR020683Ankyrin repeat-containing domain
CDDcd002047.80E-9729825No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MEARMEGEAQ HFYGFRAVDL RSVGKRSVEW DLNDWKWDGD LFVATQLNPG GSETTGRQFF  60
PIGNSSNSSS SCSDEGNNSD LMVRSTREVE KKRRVVTIEG DNNGGDGGLT LKLGDNGCDL  120
NGEREGNYAA KKTKFGGGVT NRAVCQVENC EADLSKVKDY HRRHKVCEMH SKATSAMVGG  180
IMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PEPGANGNPS DDQSSNYLLI  240
SLLKILSNMH TTRSDPTGDQ DLMSHLLKSL VSHAGEQLGK NLVELLLQGG SRGSLNLGNS  300
GLLAIEEAPQ EDLKQLSVNV PEIPQQELYA NGTATENRSE KQVKMNDFDL NDIYIDSDNT  360
DIERSPPPTN PATSSLDYPS WIHQSSPPQT SRNSDSASDQ SPSSSSEDAQ MRTGRIVFKL  420
FGKEPNDFPV VLRGQILDWL SHSPTDMESY IRPGCIVLTI YLRQAETAWE ELSDDLGFSL  480
RKLLDLSDDP LWTTGWIYVR VQNQLAFVYN GQVVVDTSLP LKSRDYSHII SVKPLAVAAT  540
GKAQFTVKGI NIRRRGTSLL CAVEGKYLIQ ETTHDSTTEE NDDLKENNEI VECVNFSCDM  600
PIISGRGFME IEDQGLSSSF FPFLVVEEDD VCSEIRILET TLEFTGTDSA KQAMDFIHEI  660
GWLLHRSKLG ESDPNPDVFP LIRFQWLIEF SMDREWCAVI RKLLNMFFDG AVGDFSSSSN  720
ATLSELCLLH RAVRKNSKPL VETLLRYVPK QQRNSLFRPD AAGPAGLTPL HIAAGKDGSE  780
DVLDALTEDP AMVGIEAWKT SRDSTGFTPE DYARLRGHFS YIHLIQRKIN KKSTTEDHVV  840
VNIPVSFSDR EQKEPKSGSV TSVLEITQIN QLPCKLCDHK LVYGTTRRSV AYRPAMLSMV  900
AIAAVCVCVA LLFKSCPEVL YVFQPFRWEL LDYGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-32138218484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0059.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639628.10.0squamosa promoter-binding-like protein 1
RefseqXP_023639629.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLD7LFY40.0D7LFY4_ARALL; Uncharacterized protein
STRINGBostr.25993s0059.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]