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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bostr.25993s0044.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
MYB |
| Protein Properties |
Length: 275aa MW: 31548.8 Da PI: 5.3671 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.25993s0044.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 59.1 | 9.8e-19 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lv+ v +G +W+ Iar g++Rt+k+c++rw++yl
Bostr.25993s0044.1.p 21 KGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTGKSCRLRWLNYL 68
79********************************************97 PP
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| 2 | Myb_DNA-binding | 46.8 | 7e-15 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T eE+ +++++ ++G++ W++Ia++++ gRt++++k++w++
Bostr.25993s0044.1.p 74 RGNITLEEQFMILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117
7899******************.*********.***********96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0016036 | Biological Process | cellular response to phosphate starvation |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0046686 | Biological Process | response to cadmium ion |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MEDYERNSNS PTHEEDSDVR KGPWTEEEDA ILVNFVSIHG DARWNHIARS SGLKRTGKSC 60
RLRWLNYLRP DVRRGNITLE EQFMILKLHS LWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ 120
KQAKHLRCDV NSNLFKETMR NVWMPRLVER INAQSSSATC ETLESMVIDP DQPINEPSPV 180
EPGFAQFNTN HYHHQQLVPP TEISATSSNS PAETLSDVQG GVVNGSGYDP VGQTGFGEFN 240
DWGCVGGDNM WTNDESLWFF QDQFCHETTS YSYN*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229140 | 0.0 | AK229140.1 Arabidopsis thaliana mRNA for MYB transcription factor, complete cds, clone: RAFL16-42-L19. |
| GenBank | AY519579 | 0.0 | AY519579.1 Arabidopsis thaliana MYB transcription factor (At2g47190) mRNA, complete cds. |
| GenBank | BT010949 | 0.0 | BT010949.1 Arabidopsis thaliana At2g47190 gene, complete cds. |
| GenBank | BT011656 | 0.0 | BT011656.1 Arabidopsis thaliana At2g47190 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yang A,Dai X,Zhang WH
A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
J. Exp. Bot., 2012. 63(7): p. 2541-56
[PMID:22301384] - Chen X, et al.
The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
Plant Cell Physiol., 2014. 55(3): p. 604-19
[PMID:24399239] - Lv Y, et al.
New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
Plant Cell Environ., 2016. 39(3): p. 556-70
[PMID:26381647] - Hong Y,Zhang H,Huang L,Li D,Song F
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
Front Plant Sci, 2016. 7: p. 4
[PMID:26834774]
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