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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bostr.25993s0011.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
MYB |
| Protein Properties |
Length: 365aa MW: 40448 Da PI: 5.1921 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.25993s0011.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgrWT+eEd++l ++++ G g+W++ ++ g++R++k+c++rw +yl
Bostr.25993s0011.1.p 14 RGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYL 61
8*********************************************97 PP
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| 2 | Myb_DNA-binding | 55.9 | 9.8e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ ++eE+el v+++ lG++ W++Ia++++ gRt++++k++w+++l
Bostr.25993s0011.1.p 67 RGNISPEEEELVVKLHSTLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
7899******************.*********.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY 60
LRSDLKRGNI SPEEEELVVK LHSTLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKLHNFI 120
RKPSISQDVS AVIMNASSLP PPPQAKRRLG RTSRSAMKPK THRTKTRKTK KTSAPLEPNA 180
DVAVAEGALM VELSGAEAEL GPRDYFGDYC NKNLVSINGD NGVLSFDDAI IDLLLDESDP 240
GHIYTSCGGD AELNTIRDSD GARGFSESSN EGKLDGLQSC PSVESFLNYE HQVNDALMDE 300
FIDWDCVWQE GSNNLCHEKE GPDSMVSWLL DGDDDATIGK SNRDNFGEPL DHDDENALVA 360
WLLS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY060588 | 0.0 | AY060588.1 Arabidopsis thaliana At2g47460/T30B22.24 mRNA, complete cds. |
| GenBank | AY142067 | 0.0 | AY142067.1 Arabidopsis thaliana At2g47460/T30B22.24 mRNA, complete cds. |
| GenBank | AY519580 | 0.0 | AY519580.1 Arabidopsis thaliana MYB transcription factor (At2g47460) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Pandey A, et al.
Co-expression of Arabidopsis transcription factor, AtMYB12, and soybean isoflavone synthase, GmIFS1, genes in tobacco leads to enhanced biosynthesis of isoflavones and flavonols resulting in osteoprotective activity.
Plant Biotechnol. J., 2014. 12(1): p. 69-80
[PMID:24102754] - Schenke D,Cai D,Scheel D
Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
Plant Cell Environ., 2014. 37(7): p. 1716-21
[PMID:24450952] - Pandey A, et al.
AtMYB12 expression in tomato leads to large scale differential modulation in transcriptome and flavonoid content in leaf and fruit tissues.
Sci Rep, 2015. 5: p. 12412
[PMID:26206248] - Lotkowska ME, et al.
The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
Plant Physiol., 2015. 169(3): p. 1862-80
[PMID:26378103] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Li Y, et al.
Development of Marker-Free Transgenic Potato Tubers Enriched in Caffeoylquinic Acids and Flavonols.
J. Agric. Food Chem., 2016. 64(14): p. 2932-40
[PMID:27019017] - Zhou Z,Schenke D,Miao Y,Cai D
Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
Plant Cell Environ., 2017. 40(3): p. 453-458
[PMID:28032363] - Wang N, et al.
MYB12 and MYB22 play essential roles in proanthocyanidin and flavonol synthesis in red-fleshed apple (Malus sieversii f. niedzwetzkyana).
Plant J., 2017. 90(2): p. 276-292
[PMID:28107780] - Stracke R,Turgut-Kara N,Weisshaar B
The AtMYB12 activation domain maps to a short C-terminal region of the transcription factor.
Z. Naturforsch., C, J. Biosci., 2017. 72(7-8): p. 251-257
[PMID:28284041] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275] - Hidalgo D, et al.
Tailoring tobacco hairy root metabolism for the production of stilbenes.
Sci Rep, 2017. 7(1): p. 17976
[PMID:29269790]
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