PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2570s0210.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CPP
Protein Properties Length: 641aa    MW: 70384.7 Da    PI: 5.0158
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2570s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.6e-15457495240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+C+C+kskClk+YC+Cfaag +C e C+C++C+Nk 
  Bostr.2570s0210.1.p 457 SCKRCKCRKSKCLKLYCDCFAAGLYCFEPCSCQNCFNKP 495
                          589**********************************96 PP
2TCR52.97.5e-17543580239
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          +++gCnC+ks ClkkYCeCf  g+ Cs++C+C +CkN 
  Bostr.2570s0210.1.p 543 HTRGCNCRKSGCLKKYCECFMMGVGCSSSCRCMGCKNI 580
                          889**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-15456497IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.2457582IPR005172CRC domain
PfamPF036384.0E-10459494IPR005172CRC domain
SMARTSM011142.0E-18542583IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.9E-12545579IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MDTPDKNRIS AVSFCNFEDS PVFQYINDLS PIEPVKPARP DNILHSLAFT SPSSLFSSPQ  60
LNSYRDSRFS IKRHRSLDLS SPVVVIGETV KNSPDALEAV KITGLSEEQL KCRPEQLANV  120
SETKPFKEQI SLAIELANSL KHGRDGFDIQ MVSCDEAPMD PENEIGRGGG SRDLSDELCR  180
QPNDPLDFDA DSDGVLQTEE MEAESGFDAE RIMFDVAGIQ NSGQQIPKIT DSRLNSFASE  240
PQQLSICFNN SANVVEPGGS CSVQVADGAP DITLSSSSKV AAIDSTAEAE GKEDTGLQPS  300
RKQRSVRRRC LTFDVGGSQK RIPLRDSTND LPLDSTSINK APSPQVCLDT SKQDTDEILP  360
IPRTIGLHLN DFVNPSVSSD QNKIKIKDGR CLPPGPTTFH HNIEDEFSTP VSTKRDLVYS  420
DIKIMEAPER SMEGECFDQH MATEHRQLSQ GPDEFGSCKR CKCRKSKCLK LYCDCFAAGL  480
YCFEPCSCQN CFNKPIHEDL VMKTRQVIEA RNPLAFAPKV VSTSDSSIDL WDENSKTPAS  540
ARHTRGCNCR KSGCLKKYCE CFMMGVGCSS SCRCMGCKNI FGHRNEKCAG ESDAVTINDE  600
AKDNGDHGDA SSQNEDTSKS ERRNRMLLPS SVAFRSLASL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1945958012121Protein lin-54 homolog
5fd3_B8e-1945958012121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2570s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0039260.0BT003926.1 Arabidopsis thaliana clone RAFL15-25-I04 (R20696) unknown protein (At3g04850) mRNA, complete cds.
GenBankBT0050100.0BT005010.1 Arabidopsis thaliana clone U20696 unknown protein (At3g04850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642810.10.0protein tesmin/TSO1-like CXC 4 isoform X1
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLA0A178VLW70.0A0A178VLW7_ARATH; Uncharacterized protein
STRINGBostr.2570s0210.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein