PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

FAR1

Protein Properties

Length: 783aa MW: 89755 Da PI: 7.4637

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.2570s0035.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.5e-21	62	136	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel Bostr.2570s0035.1.p 62 DFYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 136 6*************************************876..............589*************************98 PP
2	FAR1	68.4	1.8e-21	222	298	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++k++++g w v++l+++HnHel Bostr.2570s0035.1.p 222 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELE 297 6*************************************9994..............799*************************97 PP FAR1 91 p 91 p Bostr.2570s0035.1.p 298 P 298 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-17	62	136	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.3E-17	222	298	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-25	394	486	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	668	704	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-8	675	701	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-8	679	706	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MDMESADTEP TSLNCGNNMV VKAYPLGMVR IMNNNGIGED EGDSGVEPYV GLEFDTAEEA 60 RDFYNSYATR TGFKVRTGQL YRSRTDGTVS SRRFVCSKEG FQLNSRTGCP AFIRVQRRDT 120 GKWVLDQIQK EHNHELGGHI EETTPRPSVQ QRAPAPTKLG ISVPHRPKMK VVDEADKGQS 180 CPSGVISFKR FKGAEESDGQ TQPKATEPYA GLEFGSANEA CQFYQAYAEV VGFRVRIGQL 240 FRSKVDGSIT SRRFVCSKEG FQHPSRMGCG AYMRIKRQDS GGWIVDRLNK DHNHELEPGK 300 KNAGMKKITE DVTGGLDSVD LIELNDFSNH ISKTRENTIG KEWYPVLFDY FQSKQAEDMG 360 FFYAVELDSN GSCMSIFWAD SRSRFACSQF GDAVVFDTSY RKGEYSVPFA TFIGFNHHRQ 420 PVLLGGALVA DESKEAFSWL FQTWLRAMSG RRPRSIVADQ DLPIQQAVAQ VFPGTHHRFS 480 AWQIRSKERE NLSSFPNEFR YEYEKCLYQS QTTVEFDTMW SALVNKYGLR DNMWLREIYE 540 KRENWVPAYL RASFFGGIPV NGTFEPFYGT SLNSLTSLRE FISRYEQGLE QRREEERKED 600 FNSYNLQPFL QTKEPVEEQC RRLYTLTIFR IFQSELAQSY NYLGLKTYEE GAISRFLVRK 660 CGNENEKHAV TFSASNLNAS CSCQMFEYEG LLCRHILKVF NLLDIRELPS RYILHRWTKN 720 AEFGFVRDVE SGVTSQDLKG LMIWSLREAA SKYIEFGTSS LEKYKLAYEI MREGGKKLCW 780 QR*

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MDMESADTEP TSLNCGNNMV VKAYPLGMVR IMNNNGIGED EGDSGVEPYV GLEFDTAEEA  60
RDFYNSYATR TGFKVRTGQL YRSRTDGTVS SRRFVCSKEG FQLNSRTGCP AFIRVQRRDT  120
GKWVLDQIQK EHNHELGGHI EETTPRPSVQ QRAPAPTKLG ISVPHRPKMK VVDEADKGQS  180
CPSGVISFKR FKGAEESDGQ TQPKATEPYA GLEFGSANEA CQFYQAYAEV VGFRVRIGQL  240
FRSKVDGSIT SRRFVCSKEG FQHPSRMGCG AYMRIKRQDS GGWIVDRLNK DHNHELEPGK  300
KNAGMKKITE DVTGGLDSVD LIELNDFSNH ISKTRENTIG KEWYPVLFDY FQSKQAEDMG  360
FFYAVELDSN GSCMSIFWAD SRSRFACSQF GDAVVFDTSY RKGEYSVPFA TFIGFNHHRQ  420
PVLLGGALVA DESKEAFSWL FQTWLRAMSG RRPRSIVADQ DLPIQQAVAQ VFPGTHHRFS  480
AWQIRSKERE NLSSFPNEFR YEYEKCLYQS QTTVEFDTMW SALVNKYGLR DNMWLREIYE  540
KRENWVPAYL RASFFGGIPV NGTFEPFYGT SLNSLTSLRE FISRYEQGLE QRREEERKED  600
FNSYNLQPFL QTKEPVEEQC RRLYTLTIFR IFQSELAQSY NYLGLKTYEE GAISRFLVRK  660
CGNENEKHAV TFSASNLNAS CSCQMFEYEG LLCRHILKVF NLLDIRELPS RYILHRWTKN  720
AEFGFVRDVE SGVTSQDLKG LMIWSLREAA SKYIEFGTSS LEKYKLAYEI MREGGKKLCW  780
QR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.2570s0035.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATAC018907	0.0	AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889514.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_020889515.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_020889516.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	R0HJN8	0.0	R0HJN8_9BRAS; Uncharacterized protein
STRING	Bostr.2570s0035.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Bostr.2570s0035.1.p

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]