PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2570s0019.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 452aa    MW: 47485.9 Da    PI: 7.9178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2570s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-125782227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG C yG+rC+F+H++
  Bostr.2570s0019.1.p 57 DEPDCIYYLRTGVCGYGSRCRFNHPR 82
                         6899********************96 PP
2zf-CCCH361.2e-11104128327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rtGtC++G++Ck++H++
  Bostr.2570s0019.1.p 104 HPVCQHFMRTGTCRFGASCKYHHPR 128
                          789********************96 PP
3zf-CCCH39.49.8e-13149173226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G +C+F+H+
  Bostr.2570s0019.1.p 149 GEKECSYYMRTGQCKFGLTCRFNHP 173
                          7899********************9 PP
4zf-CCCH406.3e-13297321226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++f+rtG Ck+G++C+++H+
  Bostr.2570s0019.1.p 297 DQPECQYFMRTGDCKFGSSCRYHHP 321
                          689*********************9 PP
5zf-CCCH32.61.3e-10343368227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C +fa+ G+Ck+G+ CkF H++
  Bostr.2570s0019.1.p 343 GVAQCTHFAQHGICKFGPACKFDHSM 368
                          6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2395583IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-45582IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-105782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65983IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-56182IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.647101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6102129IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9103128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5106128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408147175IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6147174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5149174IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4153172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854295323IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6295322IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10297321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6298324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4301321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723341369IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4341368IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8343367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4347368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MERYGRAGDE GSRSDPSPEW TSQSHGGETV VEASMWRLGL SGGGGGGGGE SYPERPDEPD  60
CIYYLRTGVC GYGSRCRFNH PRDRGAVIGG VRGEAGALPE RMGHPVCQHF MRTGTCRFGA  120
SCKYHHPRQG SGSVAPVSLS YLGYPLRPGE KECSYYMRTG QCKFGLTCRF NHPVPLTVQG  180
PPQPQLQTIY PTLQSQSVPS SQQYGLVLTR PSLLPGSYLQ SSYGPPMVLP PGMVPYSGWN  240
PYQASLSAMP SPGTQPSIGS SSVYGIAPLS PSATAYTGTY QSGPSSNTSK EFPQRPDQPE  300
CQYFMRTGDC KFGSSCRYHH PVDAVPPKTG VVLSSIGLPL RPGVAQCTHF AQHGICKFGP  360
ACKFDHSMSS SLSYSPSASS LTDMPVAPYP IGSSSLSGSS APASSSNEPT TEAATAAVSS  420
SIVSGLSRPE PAETSGDSAS VSGSIEAKTS S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2570s0019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407949.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D60.0V4M3D6_EUTSA; Uncharacterized protein
STRINGBostr.2570s0019.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]